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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
Target gene links
Annotation type Category
3
DNase-seq
2
ChIP-seq
Available data
2
bed bed3+
1
bed bed9
1
bigWig
File set status
4
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
125
monocyte
45
CD8-positive, alpha-beta T cell
40
common myeloid progenitor, CD34-positive
32
endothelial cell
30
B cell
30
hepatocyte
23
CD4-positive, alpha-beta memory T cell
23
fibroblast
22
epithelial cell of proximal tubule
22
regulatory T cell
20
glomerular endothelial cell
19
T-helper 1 cell
18
macrophage
17
T-helper 17 cell
16
T cell
16
endothelial cell of hepatic sinusoid
16
endothelial cell of umbilical vein
16
pancreatic ductal cell
15
CD8-positive, alpha-beta memory T cell
15
foreskin keratinocyte
15
natural killer cell
15
osteoblast
15
pancreatic beta cell
14
foreskin fibroblast
14
mononuclear cell
14
pancreatic alpha cell
14
skeletal muscle myoblast
14
smooth muscle cell
13
T-helper 2 cell
13
pancreatic acinar cell
13
trophoblast cell
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
astrocyte
12
excitatory neuron
12
fibroblast of lung
12
keratinocyte
12
mammary epithelial cell
12
pancreatic delta cell
12
pericyte cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
neutrophil
11
skeletal muscle satellite cell
10
bronchial epithelial cell
10
glomerular visceral epithelial cell
10
neurosphere
9
erythroblast
9
mammary gland epithelial cell
9
mature neutrophil
9
retinal pigment epithelial cell
9
skeletal muscle fiber
8
dermis blood vessel endothelial cell
8
fibroblast of cardiac tissue
8
fibroblast of dermis
8
hepatic stellate cell
8
kidney tubule cell
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
kidney glomerular epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
memory B cell
7
mesangial cell
7
mesenchymal stem cell
7
pancreatic stellate cell
7
renal cortical epithelial cell
6
CD1c-positive myeloid dendritic cell
6
cardiac muscle cell
6
choroid plexus epithelial cell
6
enterocyte
6
epithelial cell of prostate
6
fibroblast of breast
6
gamma-delta T cell
6
glutamatergic neuron
6
kidney epithelial cell
6
myoepithelial cell of mammary gland
6
naive T cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
skin fibroblast
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
alternatively activated macrophage
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
epithelial cell of esophagus
5
foreskin melanocyte
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mast cell
5
myofibroblast cell
5
pancreatic endothelial cell
5
pancreatic polypeptide-secreting cell
5
plasma cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
tracheal epithelial cell
5
type II pneumocyte
4
T follicular helper cell
4
T-cell
4
acute myeloid leukemia cell
4
adipocyte
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
basal cell
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
cortical cell of adrenal gland
4
dermis lymphatic vessel endothelial cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
inflammatory macrophage
4
iris pigment epithelial cell
4
kidney capillary endothelial cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
luminal epithelial cell of mammary gland
4
lung microvascular endothelial cell
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
naive B cell
4
nephron progenitor
4
non-pigmented ciliary epithelial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
renal epithelial cell
4
vascular associated smooth muscle cell
3
CD4-positive helper T cell
3
Cycling Mononuclear Phagocyte
Organ
4
blood vessel
4
epithelium
4
kidney
4
vasculature
Life stage
3
embryonic
1
fetal
Date released
2
September, 2022
1
January, 2020
1
May, 2020
Software used
1
chromhmm
1
deltasvm
1
macs
1
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_category!
Target gene links
biosample_term_name!
Proximal Tubule Epithelial Cell Segment 3
month_released!
January, 2022
Showing 4 of 4 results
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Download
FileSet
DSR302SLS
released
Annotation file set
: Candidate regulatory elements for BSS01077 kidney capillary endothelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR701BDE
released
Annotation file set
: Chromatin states for BSS01077 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR528XCA
released
Annotation file set
: Variant allelic effects of kidney capillary endothelial cell ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR479BAK
released
Annotation file set
: Accessible chromatin annotation of kidney capillary endothelial cell from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP