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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
Annotation Category
Target gene links
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
in vitro differentiated cells
Biosample term
63
heart
61
stomach
54
kidney
51
brain
51
lung
50
muscle of arm
45
small intestine
44
adrenal gland
42
muscle of leg
41
muscle of back
41
placenta
40
A549
40
common myeloid progenitor, CD34-positive
40
large intestine
39
left lung
37
islet of Langerhans
33
right lung
32
liver
32
right kidney
31
thymus
30
B cell
30
hematopoietic multipotent progenitor cell
30
renal cortex interstitium
29
renal pelvis
27
left kidney
23
CD4-positive, alpha-beta memory T cell
23
heart left ventricle
23
monocyte
23
spinal cord
23
spleen
21
adipose tissue
21
epithelial cell of proximal tubule
20
hepatocyte
19
T-helper 1 cell
19
body of pancreas
19
regulatory T cell
19
tibial nerve
18
T-helper 17 cell
18
endothelial cell
18
glomerular endothelial cell
18
subcutaneous adipose tissue
17
macrophage
16
caudate nucleus
16
induced pluripotent stem cell
16
neural progenitor cell
15
CD8-positive, alpha-beta memory T cell
15
K562
15
MCF-7
15
adipocyte
15
coronary artery
15
foreskin keratinocyte
15
natural killer cell
15
sigmoid colon
14
T-helper 2 cell
14
endothelial cell of umbilical vein
14
omental fat pad
14
substantia nigra
13
CD8-positive, alpha-beta T cell
13
T cell
13
ascending aorta
13
heart right ventricle
13
right atrium auricular region
13
tibial artery
13
trophoblast cell
12
CD14-positive monocyte
12
EndoC_BH1
12
H1-hESC
12
cerebellum
12
chorionic villus
12
fibroblast
12
fibroblast of lung
12
frontal cortex
12
mononuclear cell
12
ovary
12
retina
12
skeletal muscle tissue
12
thyroid gland
11
CD4-positive, alpha-beta T cell
11
cardiomyocytes
11
endocrine pancreas
11
gastrocnemius medialis
11
smooth muscle cell
11
temporal lobe
11
testis
11
transverse colon
Peyer's patch
10
cardiac muscle cell
10
foreskin fibroblast
10
layer of hippocampus
10
muscle of trunk
10
psoas muscle
10
putamen
10
skeletal muscle myoblast
9
HeLa-S3
9
aorta
9
extended pluripotent stem (EPS) cells
9
left cardiac atrium
9
left renal cortex interstitium
9
neurosphere
9
neutrophil
9
pancreatic ductal cell
9
upper lobe of left lung
8
Ammon's horn
8
H9
8
angular gyrus
8
dermis blood vessel endothelial cell
8
esophagus muscularis mucosa
8
esophagus squamous epithelium
8
fibroblast of dermis
8
mesenchymal stem cell
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
pancreas
8
progenitor cell of endocrine pancreas
8
right renal pelvis
7
SK-N-SH
7
breast epithelium
7
cingulate gyrus
7
colonic mucosa
7
duodenal mucosa
7
esophagus
7
glomerular visceral epithelial cell
7
left renal pelvis
7
mammary gland epithelial cell
7
prostate gland
7
right lobe of liver
7
right renal cortex interstitium
6
22Rv1
6
HepG2
6
SK-N-DZ
6
WI38
6
amygdala
6
anterior cingulate cortex
6
bronchial epithelial cell
6
cerebellum (Hemisphere)
6
chorion membrane
6
embryonic stem cell
6
endodermal cell
6
endometrium adenocarcinoma
6
epithelial cell of prostate
6
eye
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
gamma-delta T cell
6
hypothalamus
6
immortal human breast epithelial cell line cell
6
keratinocyte
6
lower leg skin
6
lymphoblastoid cell line
6
pancreatic beta cell
6
thoracic aorta
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
GM12878
5
Glomerular Capillary Endothelial Cell
5
HEK293
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
LNCaP clone FGC
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
Life stage
3
embryonic
Date released
2
September, 2022
1
February, 2021
Software used
macs
1
chromhmm
1
encode-ccres
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
annotation_category!
Target gene links
biosample_term_name!
Peyer's patch
software_used.software.name!
macs
Showing 3 of 3 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP