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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
caQTL
1
eQTL
Annotation Category
cis-regulatory elements
4
Target gene links
1
Genetic variant effects
Annotation type Category
3
DNase-seq
2
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
primary cell
1
stem cell
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
22
heart
21
stomach
19
A549
19
CD14-positive monocyte
19
HFFc6
17
adrenal gland
17
brain
17
lung
17
muscle of arm
17
small intestine
16
kidney
15
placenta
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
11
right lung
10
B cell
10
adipose tissue
10
endothelial cell
10
fibroblast
10
hematopoietic multipotent progenitor cell
10
liver
10
pericyte cell
10
pituitary stalk
10
renal cortex interstitium
10
renal pelvis
10
right kidney
10
smooth muscle cell
9
CD4-positive, alpha-beta memory T cell
9
heart left ventricle
9
left kidney
8
GM12878
8
H9
8
psoas muscle
8
spinal cord
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
adipocyte
7
lymphocyte
7
macrophage
7
sigmoid colon
7
trophoblast cell
6
MCF-7
6
T cell
6
body of pancreas
6
dendritic cell
6
heart right ventricle
6
hepatocyte
6
keratinocyte
6
mononuclear cell
6
olfactory receptor cell
6
ovary
6
pancreas
5
CD8-positive, alpha-beta T cell
5
coronary artery
5
gastrocnemius medialis
5
mammary gland epithelial cell
5
mesenchymal stem cell
5
monocyte
5
muscle of trunk
5
natural killer cell
5
neural progenitor cell
5
neutrophil
5
pancreatic delta cell
5
thyroid gland
5
tibial nerve
5
transverse colon
4
CyT49
4
HUES8
4
aorta
4
astrocyte
4
cardiac muscle cell
4
cardiomyocytes (cardiac muscle cell)
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
iPSC derived cell line
4
islet of Langerhans
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic ductal cell
4
regulatory T cell
4
retina
4
right atrium auricular region
4
tibial artery
3
CD4-positive, alpha-beta T cell
3
HCT116
3
HepG2
3
Peyer's patch
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
ascending aorta
3
basal cell
3
breast epithelium
3
caudate nucleus
3
chorion membrane
3
cortical cell of adrenal gland
3
endometrium adenocarcinoma
3
enterocyte
3
epithelial cell of esophagus
3
epithelial cell of prostate
3
esophagus
3
foreskin fibroblast
3
frontal cortex
3
immortal human breast epithelial cell line cell
3
layer of hippocampus
3
left renal pelvis
3
luminal epithelial cell of mammary gland
3
mesendoderm
3
myofibroblast cell
3
naive T cell
3
neurosphere
3
pancreatic A cell
3
right renal pelvis
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
skin fibroblast
3
testis
3
thoracic aorta
3
trophoblast
3
type B pancreatic cell
3
type II pneumocyte
3
upper lobe of left lung
2
cardiac fibroblast
2
muscle of leg
2
22Rv1
2
A673
2
Ammon's horn
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
EndoC_BH1
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MIN6
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
Schwann cell
2
T-cell
2
T47D
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
angular gyrus
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
bipolar neuron
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
cardiac precursors (cardiac muscle cell)
2
cerebellum
2
choroid plexus epithelial cell
2
cingulate gyrus
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
enteric smooth muscle cell
2
epithelial cell of proximal tubule
2
erythroblast
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
gabaergic neuron
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
glutamatergic neuron
Organ
5
connective tissue
Life stage
1
adult
1
embryonic
Date released
2
September, 2022
1
February, 2024
1
March, 2020
1
May, 2021
Software used
2
r
1
abc
1
nospecificsoft_customcode
1
qTLtools
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
5
AMP
RFA
4
AMP
1
AMP2
annotation_category!
cis-regulatory elements
annotation_type!
caQTL
biosample_term_name!
AG10803 cell
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP