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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
1
caQTL
1
eQTL
gene expression
Annotation Category
cis-regulatory elements
4
Target gene links
2
Genetic variant effects
Annotation type Category
3
DNase-seq
2
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
pCHi-C
1
snATAC-seq
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
3
in vitro differentiated cells
2
primary cell
1
stem cell
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
22
heart
22
stomach
21
islet of Langerhans
19
A549
19
CD14-positive monocyte
19
HFFc6
19
brain
19
liver
18
adrenal gland
18
lung
18
small intestine
17
muscle of arm
16
kidney
16
placenta
macrophage
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
14
thymus
13
adipose tissue
13
left lung
13
muscle of back
12
endothelial cell
12
fibroblast
11
coronary artery
11
monocyte
11
right kidney
11
right lung
11
smooth muscle cell
11
subcutaneous adipose tissue
10
B cell
10
body of pancreas
10
heart left ventricle
10
hematopoietic multipotent progenitor cell
10
pericyte cell
10
pituitary stalk
10
renal cortex interstitium
10
renal pelvis
10
tibial nerve
9
CD4-positive, alpha-beta memory T cell
9
caudate nucleus
9
left kidney
9
neutrophil
9
right atrium auricular region
9
spinal cord
9
spleen
9
tibial artery
8
GM12878
8
H9
8
T cell
8
frontal cortex
8
induced pluripotent stem cell
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
pancreatic delta cell
8
psoas muscle
8
putamen
8
substantia nigra
7
CD8-positive, alpha-beta memory T cell
7
adipocyte
7
ascending aorta
7
cerebellum
7
lymphocyte
7
omental fat pad
7
ovary
7
pancreas
7
pancreatic acinar cell
7
pancreatic alpha cell
7
pancreatic beta cell
7
pancreatic ductal cell
7
sigmoid colon
7
trophoblast cell
6
Ammon's horn
6
MCF-7
6
dendritic cell
6
heart right ventricle
6
hepatocyte
6
iPSC derived cell line
6
keratinocyte
6
lymphoblastoid cell line
6
mesenchymal stem cell
6
mononuclear cell
6
natural killer cell
6
olfactory receptor cell
6
regulatory T cell
6
thyroid gland
6
transverse colon
5
CD8-positive, alpha-beta T cell
5
EndoC_BH1
5
amygdala
5
anterior cingulate cortex
5
cerebellum (Hemisphere)
5
endothelial cell of umbilical vein
5
gastrocnemius medialis
5
hypothalamus
5
mammary gland epithelial cell
5
muscle of trunk
5
neural progenitor cell
5
nucleus accumbens
5
retina
5
right lobe of liver
5
skeletal muscle tissue
4
C1 segment of cervical spinal cord
4
CD4-positive helper T cell
4
CyT49
4
HUES8
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
aorta
4
astrocyte
4
cardiac muscle cell
4
cardiomyocytes (cardiac muscle cell)
4
cartilage tissue
4
chorionic villus
4
colon epithelial cell
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
esophagus
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
gastrocnemius medialis(Muscle - Skeletal)
4
layer of hippocampus
4
left ventricle myocardium
4
pancreatic stellate cell
4
skeletal muscle myoblast
4
skin of body
4
testis
3
CD4-positive, alpha-beta T cell
3
HCT116
3
HepG2
3
Peyer's patch
3
SK-N-SH
3
activated CD4-positive, alpha-beta T cell
3
basal cell
3
blood cell
3
breast epithelium
3
chorion membrane
3
cortical cell of adrenal gland
3
endometrium adenocarcinoma
3
enterocyte
3
epithelial cell of esophagus
3
epithelial cell of prostate
3
esophagus muscularis mucosa
3
foreskin fibroblast
3
immortal human breast epithelial cell line cell
3
left renal cortex interstitium
3
left renal pelvis
3
luminal epithelial cell of mammary gland
3
mesendoderm
3
myofibroblast cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neurosphere
3
pancreatic A cell
3
pancreatic MUC5B+ductal cell
3
pancreatic alpha+beta cell
3
pancreatic cycling alpha cell
3
pancreatic endothelial cell
3
pancreatic gamma+epsilon cell
3
pancreatic macrophage cell
3
pancreatic mast cell
3
pancreatic quiescent stellate cell
3
prostate gland
3
right renal cortex interstitium
3
right renal pelvis
3
skin fibroblast
3
thoracic aorta
3
trophoblast
3
type B pancreatic cell
3
type I muscle cell
3
type II muscle cell
3
type II pneumocyte
3
upper lobe of left lung
3
uterus
3
vagina
2
cardiac fibroblast
2
muscle of leg
2
22Rv1
2
A673
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Afferent / Efferent Arteriole Endothelial Cell
2
B Cell
2
BJAB cell
2
Brodmann (1909) area 46
2
Classical Dendritic Cell
2
Connecting Tubule Cell
2
Connecting Tubule Intercalated Cell Type A
2
Connecting Tubule Principal Cell
2
Cortical Thick Ascending Limb Cell
2
Cycling Endothelial Cell
2
Cycling Epithelial Cell
2
Cycling T Cell
Organ
6
connective tissue
Life stage
1
adult
1
embryonic
Date released
2
September, 2022
1
February, 2024
1
March, 2020
1
May, 2021
1
October, 2022
Software used
2
r
1
abc
1
eigenmt
1
nospecificsoft_customcode
1
qTLtools
1
rasqual
Lab
3
AMP-T2D consortium
2
Stephen Parker, UMich
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
4
AMP
2
AMP2
annotation_category!
cis-regulatory elements
annotation_type!
gene expression
biosample_term_name!
aorta
macrophage
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP