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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
1
caQTL
1
eQTL
1
gene expression
Annotation Category
cis-regulatory elements
4
Target gene links
2
Genetic variant effects
1
Gene expression levels
Annotation type Category
3
DNase-seq
2
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
pCHi-C
1
snATAC-seq
1
snRNA-seq
Available data
6
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
3
in vitro differentiated cells
3
primary cell
1
stem cell
Biosample term
55
HeLa-S3
47
H1-hESC
26
monocyte
23
K562
22
endothelial cell
19
A549
19
CD14-positive monocyte
19
HFFc6
19
hepatocyte
18
epithelial cell of proximal tubule
17
induced pluripotent stem cell
17
macrophage
16
glomerular endothelial cell
14
common myeloid progenitor, CD34-positive
13
EndoC_BH1
13
pancreatic ductal cell
13
regulatory T cell
13
smooth muscle cell
12
B cell
12
fibroblast
12
neural progenitor cell
11
T-helper 1 cell
11
T-helper 17 cell
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
11
pancreatic delta cell
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pancreatic beta cell
10
pericyte cell
10
pituitary stalk
9
CD4-positive, alpha-beta memory T cell
9
adipocyte
9
extended pluripotent stem (EPS) cells
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
neutrophil
9
progenitor cell of endocrine pancreas
8
CD8-positive, alpha-beta T cell
8
GM12878
8
H9
8
T cell
8
cardiomyocytes (cardiac muscle cell)
8
natural killer cell
7
CD8-positive, alpha-beta memory T cell
7
T-helper 2 cell
7
dendritic cell
7
glomerular visceral epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphocyte
7
mesenchymal stem cell
7
trophoblast cell
6
MCF-7
6
cardiac precursors (cardiac muscle cell)
6
iPSC derived cell line
6
keratinocyte
6
kidney interstitial cell
6
lymphoblastoid cell line
6
mononuclear cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
olfactory receptor cell
6
pancreatic stellate cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
astrocyte
5
endothelial cell of umbilical vein
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mammary gland epithelial cell
5
memory B cell
5
mesangial cell
5
skeletal muscle myoblast
4
CD4-positive helper T cell
4
CyT49
4
HUES8
4
adult endothelial progenitor cell
4
cardiac muscle cell
4
colon epithelial cell
4
endothelial cell of hepatic sinusoid
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
gamma-delta T cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
nephron progenitor
4
osteoblast
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
skeletal muscle fiber
4
skeletal muscle satellite cell
4
smooth muscle cell of the coronary artery
4
type I muscle cell
4
type II muscle cell
4
vascular associated smooth muscle cell
3
CD4-positive, alpha-beta T cell
3
Cycling Mononuclear Phagocyte
3
HCT116
3
HepG2
3
Mast Cell
3
S-shaped body
3
SK-N-SH
3
Schwann cell
3
T follicular helper cell
3
activated CD4-positive, alpha-beta T cell
3
basal cell
3
blood cell
3
central memory CD8-positive, alpha-beta T cell
3
cortical cell of adrenal gland
3
effector memory CD8-positive, alpha-beta T cell
3
endometrium adenocarcinoma
3
enterocyte
3
epithelial cell of esophagus
3
epithelial cell of prostate
3
foreskin fibroblast
3
hepatic stellate cell
3
hepatocyte(AFP)
3
immortal human breast epithelial cell line cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney epithelial cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
luminal epithelial cell of mammary gland
3
mast cell
3
mesendoderm
3
myofibroblast cell
3
naive B cel
3
naive B cell
3
naive T cell
3
neurosphere
3
pancreatic A cell
3
pancreatic quiescent stellate cell
3
renal cortical epithelial cell
3
skin fibroblast
3
type B pancreatic cell
3
type II pneumocyte
Organ
7
connective tissue
Life stage
1
adult
1
embryonic
Date released
2
February, 2024
2
September, 2022
1
March, 2020
1
May, 2021
1
October, 2022
Software used
3
r
1
abc
1
deeptools
1
eigenmt
1
nospecificsoft_customcode
1
qTLtools
1
rasqual
1
samtools
1
umitools
Lab
3
AMP-T2D consortium
3
Stephen Parker, UMich
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
4
AMP
3
AMP2
annotation_category!
cis-regulatory elements
annotation_type!
representative DNase hypersensitivity sites
assembly!
hg18
biosample_type!
tissue
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP