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Schema
Citing CMDGA
Clear Filters
Annotation type
1
eQTL
variant allelic effects
Annotation Category
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
1
RNA-seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
tissue
Biosample term
52
HeLa-S3
38
H1-hESC
19
HFFc6
18
islet of Langerhans
17
K562
15
CD14-positive monocyte
12
macrophage
11
liver
11
monocyte
10
endothelial cell
10
pituitary stalk
10
subcutaneous adipose tissue
9
pericyte cell
8
induced pluripotent stem cell
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
smooth muscle cell
7
GM12878
7
H9
7
coronary artery
7
hepatocyte
7
neutrophil
6
adipose tissue
6
dendritic cell
6
fibroblast
6
iPSC derived cell line
6
lymphoblastoid cell line
6
lymphocyte
6
olfactory receptor cell
6
putamen
6
substantia nigra
5
Ammon's horn
5
CD8-positive, alpha-beta T cell
5
amygdala
5
anterior cingulate cortex
5
body of pancreas
5
caudate nucleus
5
cerebellum
5
frontal cortex
5
hypothalamus
5
nucleus accumbens
5
omental fat pad
5
right atrium auricular region
5
tibial artery
5
tibial nerve
4
C1 segment of cervical spinal cord
4
CD4-positive helper T cell
4
CyT49
4
EndoC_BH1
4
HUES8
4
adipocyte
4
adrenal gland
4
ascending aorta
4
cartilage tissue
4
cerebellum (Hemisphere)
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endothelial cell of hepatic sinusoid
4
gastrocnemius medialis(Muscle - Skeletal)
4
left ventricle myocardium
4
mesenchymal stem cell
4
pancreas
4
pancreatic delta cell
4
psoas muscle
4
right lobe of liver
3
CD4-positive, alpha-beta T cell
3
activated CD4-positive, alpha-beta T cell
3
astrocyte
3
blood cell
3
cardiomyocytes (cardiac muscle cell)
3
colon epithelial cell
3
heart left ventricle
3
keratinocyte
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
ovary
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
regulatory T cell
3
skin of body
3
small intestine
3
spleen
3
stomach
3
thymus
3
type B pancreatic cell
3
type I muscle cell
3
type II muscle cell
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Afferent / Efferent Arteriole Endothelial Cell
2
B Cell
2
B cell
2
BJAB cell
2
Classical Dendritic Cell
2
Connecting Tubule Cell
2
Connecting Tubule Intercalated Cell Type A
2
Connecting Tubule Principal Cell
2
Cortical Thick Ascending Limb Cell
2
Cycling Endothelial Cell
2
Cycling Epithelial Cell
2
Cycling T Cell
2
Cytotoxic T Cell
2
Degenerative Connecting Tubule Cell
2
Degenerative Connecting Tubule Cell / Principal Cell
2
Degenerative Cortical Thick Ascending Limb Cell
2
Degenerative Distal Convoluted Tubule Cell
2
Degenerative Intercalated Cell Type A
2
Degenerative Peritubular Capillary Endothelial Cell
2
Degenerative Principal Cell
2
Degenerative Proximal Tubule Epithelial Cell
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
2
Degenerative Vascular Smooth Muscle Cell
2
Descending Thin Limb Cell Type 1
2
Distal Convoluted Tubule Cell Type 1
2
Fibroblast
2
Glomerular Capillary Endothelial Cell
2
HCT116
2
HepG2
2
Intercalated Cell Type A
2
Intercalated Cell Type B
2
Jurkat
2
Lymphatic Endothelial Cell
2
M2 Macrophage
2
MCF 10A cell
2
Medullary Thick Ascending Limb Cell
2
Mesangial Cell
2
Monocyte
2
Monocyte-derived Cell
2
Myofibroblast
2
Natural Killer T Cell
2
Natural Killer T Cell Type 1
2
Natural Killer T Cell Type 2
2
Non-Classical Monocyte
2
Parietal Epithelial Cell
2
Peritubular Capillary Endothelial Cell
2
Plasma Cell
2
Plasmacytoid Dendritic Cell
2
Podocyte
2
Principal Cell
2
Proximal Tubule Epithelial Cell Segment 1 and 2
2
Proximal Tubule Epithelial Cell Segment 3
2
Regulatory T Cell
2
Renin-positive Juxtaglomerular Granular Cell
2
T Cell
2
T cell
2
T-cell
2
THP-1
2
Transitional Principal-Intercalated Cell
2
U937
2
Vascular Smooth Muscle Cell / Pericyte
2
activated CD8-positive, alpha-beta T cell
2
aorta
2
articular chondrocyte
2
blood
2
blood vessel smooth muscle cell
2
brain
2
cortical cell of adrenal gland
2
dorsolateral prefrontal cortex
2
endothelial cell of umbilical vein
2
enteric smooth muscle cell
2
erythroblast
2
esophagus
2
fat cell
2
gabaergic neuron
2
glutamatergic neuron
2
heart right ventricle
2
luminal epithelial cell of mammary gland
2
lung
2
lymphocyte of B lineage (iPSC)
2
megakaryocyte
2
memory B cell
2
mesendoderm
2
microglial cell
2
muscle
2
naive B cell
2
placenta
2
sigmoid colon
2
skeletal muscle tissue
2
smooth muscle cell of the coronary artery
2
smooth muscle cell of the esophagus
2
spinal cord
2
thyroid gland
2
tissue
2
transverse colon
2
trophoblast cell
2
type II pneumocyte
2
uterus
2
visceral abdominal adipose tissue
1
A549
1
A673
1
B cell, CD19-positive
1
B-lymphoblastoid cell line
1
CD56-positive, CD161-positive immature natural killer cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
GM18486
1
GM18505
Organ
1
kidney
Date released
1
August, 2021
Software used
r
1
matrix-eQTL
Lab
1
Katalin Susztak, Upenn
Project
1
AMP
RFA
1
AMP2
annotation_category!
cis-regulatory elements
annotation_type!
variant allelic effects
biosample_term_name!
common myeloid progenitor, CD34-positive
software_used.software.name!
r
Showing 1 of 1 results
table-tab-icon
matrix-icon
Download
FileSet
DSR049INR
released
Annotation file set
: eQTL of kidney from Katalin Susztak Lab based on 121 kidney samples
Lab:
Katalin Susztak, Upenn
Project:
AMP