Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
2
gene expression
1
variant allelic effects
Annotation Category
cis-regulatory elements
4
Target gene links
2
Gene expression levels
1
Genetic variant effects
Annotation type Category
6
DNase-seq
4
ATAC-seq
4
H3K27ac ChIP-Seq
ChIP-seq
1
RNA-seq
1
snATAC-seq
1
snRNA-seq
Available data
5
bed bed3+
1
tsv
File set status
7
released
Genome assembly (visualization)
6
hg19
Organism
7
Homo sapiens
Biosample type
5
in vitro differentiated cells
2
primary cell
Biosample term
52
HeLa-S3
46
H1-hESC
32
islet of Langerhans
24
monocyte
22
endothelial cell
19
HFFc6
K562
17
epithelial cell of proximal tubule
17
hepatocyte
17
induced pluripotent stem cell
17
macrophage
16
subcutaneous adipose tissue
15
CD14-positive monocyte
15
glomerular endothelial cell
13
EndoC_BH1
13
liver
13
pancreatic ductal cell
12
fibroblast
12
smooth muscle cell
11
cardiomyocytes
11
pancreatic delta cell
10
adipose tissue
10
coronary artery
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pancreatic beta cell
10
pituitary stalk
10
regulatory T cell
9
extended pluripotent stem (EPS) cells
9
kidney
9
pericyte cell
9
progenitor cell of endocrine pancreas
9
right atrium auricular region
9
tibial nerve
8
CD8-positive, alpha-beta T cell
8
T-helper 1 cell
8
T-helper 17 cell
8
body of pancreas
8
cardiomyocytes (cardiac muscle cell)
8
frontal cortex
8
neural progenitor cell
8
putamen
8
tibial artery
7
GM12878
7
H9
7
adipocyte
7
caudate nucleus
7
cerebellum
7
dendritic cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
omental fat pad
7
substantia nigra
6
Ammon's horn
6
amygdala
6
anterior cingulate cortex
6
ascending aorta
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
glomerular visceral epithelial cell
6
heart
6
heart left ventricle
6
hypothalamus
6
iPSC derived cell line
6
kidney interstitial cell
6
lymphoblastoid cell line
lymphocyte
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
nucleus accumbens
6
olfactory receptor cell
6
pancreatic stellate cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
adrenal gland
5
gastrocnemius medialis(Muscle - Skeletal)
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
memory B cell
5
mesangial cell
5
mesenchymal stem cell
5
natural killer cell
5
neutrophil
5
pancreas
5
right lobe of liver
4
B cell
4
CD4-positive helper T cell
4
CyT49
4
HUES8
4
T cell
4
T-helper 2 cell
4
adult endothelial progenitor cell
4
astrocyte
4
bone tissue
4
brain
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endothelial cell of hepatic sinusoid
4
gamma-delta T cell
4
heart right ventricle
4
keratinocyte
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
nephron progenitor
4
ovary
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
psoas muscle
4
skeletal muscle fiber
4
smooth muscle cell of the coronary artery
4
spleen
4
stomach
4
type I muscle cell
4
type II muscle cell
4
vascular associated smooth muscle cell
4
visceral abdominal adipose tissue
3
CD4-positive, alpha-beta T cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
T follicular helper cell
3
activated CD4-positive, alpha-beta T cell
3
aorta
3
basal cell
3
blood cell
3
cardiac muscle cell
3
central memory CD8-positive, alpha-beta T cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
dorsolateral prefrontal cortex
3
effector memory CD8-positive, alpha-beta T cell
3
endothelial cell of umbilical vein
3
enterocyte
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
Organ
7
connective tissue
Life stage
1
adult
Date released
4
May, 2021
2
February, 2024
1
February, 2021
Software used
4
abc
2
r
1
deeptools
1
deltasvm
1
samtools
1
umitools
Lab
4
Jesse Engreitz, Stanford University
1
AMP-T2D consortium
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
7
AMP
RFA
6
AMP
1
AMP2
annotation_category!
cis-regulatory elements
annotation_type_category!
ChIP-seq
biosample_term_name!
K562
lymphocyte
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR039HOA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d14 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR164LWB
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d6 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR542JXE
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d2 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR941KCA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d0 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP