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Schema
Citing CMDGA
Clear Filters
Annotation type
6
gene expression
2
variant allelic effects
Annotation Category
cis-regulatory elements
6
Gene expression levels
2
Genetic variant effects
Annotation type Category
5
RNA-seq
2
snATAC-seq
1
snRNA-seq
Available data
5
bigWig
5
tsv
2
bed bed3+
File set status
8
released
Genome assembly (visualization)
5
GRCh38
3
hg19
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
51
HeLa-S3
37
H1-hESC
19
HFFc6
16
K562
9
extended pluripotent stem (EPS) cells
9
progenitor cell of endocrine pancreas
6
GM12878
6
H9
6
fibroblast
6
hepatocyte
6
lymphocyte
6
olfactory receptor cell
5
T-helper 1 cell
5
regulatory T cell
4
CyT49
4
HUES8
4
T-helper 17 cell
4
endothelial cell
4
endothelial cell of hepatic sinusoid
4
iPSC derived cell line
4
pancreatic ductal cell
4
skeletal muscle fiber
4
smooth muscle cell
3
enterocyte
3
hepatocyte(AFP)
3
macrophage
3
myofibroblast cell
2
HCT116
2
Schwann cell
2
T cell
2
adipocyte
2
basal cell
2
epithelial cell of esophagus
2
goblet cell
2
mesenchymal stem cell
2
type I muscle cell
2
type II muscle cell
2
vascular associated smooth muscle cell
1
B-1a B cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
GM18486
1
GM18505
1
GM18507
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
Satellite Cells, Skeletal Muscle
1
T-helper 2 cell
1
aorta wall
1
astrocyte
1
bronchial goblet cell
1
cardiac muscle cell
1
central memory CD4-positive, alpha-beta T cell
1
central memory CD8-positive, alpha-beta T cell
1
cortical cell of adrenal gland
1
effector memory CD4-positive, alpha-beta T cell
1
effector memory CD8-positive, alpha-beta T cell
1
excitatory neuron
1
glial cell
1
granulosa cell
1
hippocampal neuron
1
islet of Langerhans
1
keratinocyte
1
leukocyte
1
liver
1
lower motor neuron
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mammary gland epithelial cell
1
mast cell
1
memory B cell
1
mesothelial cell
1
naive B cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
nephron tubule
1
neural cell
1
pancreatic acinar cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic endocrine cell
1
pancreatic polypeptide-secreting cell
1
parietal cell
1
peptic cell
1
skeletal muscle
1
skeletal muscle satellite cell
1
subcutaneous adipose tissue
1
thyroid follicular cell
1
type II pneumocyte
1
visceral abdominal adipose tissue
Organ
6
epithelium
6
liver
2
connective tissue
Life stage
5
adult
Date released
8
February, 2024
5
May, 2021
4
February, 2021
4
March, 2020
1
July, 2020
1
May, 2020
1
November, 2021
Software used
5
salmon
2
deltasvm
1
deeptools
1
r
1
samtools
1
umitools
Lab
5
Ines Cebola, Imperial College London
2
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
8
AMP
RFA
6
AMP2
2
AMP
annotation_category!
cis-regulatory elements
annotation_type_category!
ChIP-seq
Showing 8 of 8 results
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Download
FileSet
DSR361ZHP
released
Annotation file set
: Gene expression of primary hepatocytes in basal media with 10nM insulin, 320µM palmitic acid and 320µM oleic acid (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR693CSI
released
Annotation file set
: Gene expression of primary hepatocytes in basal media with 10nM insulin and 320µM oleic acid (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR089LNQ
released
Annotation file set
: Gene expression of primary hepatocytes in basal media with 10nM insulin and 320µM palmitic acid (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR597BJR
released
Annotation file set
: Gene expression of primary hepatocytes in basal media with 10nM insulin (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR904MAL
released
Annotation file set
: Gene expression of primary hepatocytes in basal media with 0.1nM insulin (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR179RJC
released
Annotation file set
: Variant allelic effects annotation of Hepatocytes from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP