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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
gene expression
1
target gene predictions
Annotation Category
cis-regulatory elements
2
Gene expression levels
1
Target gene links
Annotation type Category
2
RNA-seq
1
pCHi-C
Available data
2
tsv
1
bed bed3+
File set status
3
released
Genome assembly (visualization)
1
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
54
HeLa-S3
46
H1-hESC
32
islet of Langerhans
25
heart
24
monocyte
22
K562
21
stomach
20
brain
19
HFFc6
19
lung
18
A549
17
adrenal gland
17
epithelial cell of proximal tubule
17
liver
17
muscle of arm
17
small intestine
15
adipose tissue
15
glomerular endothelial cell
15
kidney
15
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
13
muscle of leg
13
subcutaneous adipose tissue
13
thymus
12
neural progenitor cell
12
regulatory T cell
12
tibial nerve
11
B cell
11
EndoC_BH1
11
T-helper 1 cell
11
body of pancreas
11
cardiomyocytes
11
coronary artery
11
heart left ventricle
11
hematopoietic multipotent progenitor cell
11
hepatocyte
11
right atrium auricular region
11
right kidney
11
right lung
10
T-helper 17 cell
10
caudate nucleus
10
frontal cortex
10
macrophage
10
renal cortex interstitium
10
renal pelvis
10
tibial artery
9
CD4-positive, alpha-beta memory T cell
9
cerebellum
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
left kidney
9
neutrophil
9
progenitor cell of endocrine pancreas
9
putamen
9
spleen
9
substantia nigra
8
ascending aorta
8
cardiomyocytes (cardiac muscle cell)
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
omental fat pad
8
spinal cord
7
Ammon's horn
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
T-helper 2 cell
7
endothelial cell
7
glomerular visceral epithelial cell
7
heart right ventricle
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphocyte
7
ovary
7
psoas muscle
6
T cell
6
amygdala
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
hypothalamus
6
iPSC derived cell line
6
kidney interstitial cell
6
lymphoblastoid cell line
6
mononuclear cell
6
nucleus accumbens
6
olfactory receptor cell
6
pancreas
6
retina
6
right lobe of liver
6
sigmoid colon
6
skeletal muscle tissue
5
C1 segment of cervical spinal cord
5
MCF-7
5
aorta
5
gastrocnemius medialis(Muscle - Skeletal)
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
mesangial cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
natural killer cell
5
pancreatic ductal cell
5
testis
5
thyroid gland
5
transverse colon
5
trophoblast cell
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
adult endothelial progenitor cell
4
bone tissue
4
chorionic villus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
esophagus
4
foreskin keratinocyte
4
gamma-delta T cell
4
gastrocnemius medialis
4
layer of hippocampus
4
muscle of trunk
4
nephron progenitor
4
skeletal muscle myoblast
4
skin of body
4
vagina
4
visceral abdominal adipose tissue
3
CD8-positive, alpha-beta T cell
3
HCT116
3
Peyer's patch
3
S-shaped body
3
T follicular helper cell
3
adipocyte
3
blood cell
3
central memory CD8-positive, alpha-beta T cell
3
chorion membrane
3
dorsolateral prefrontal cortex
3
effector memory CD8-positive, alpha-beta T cell
3
endometrium adenocarcinoma
3
esophagus muscularis mucosa
3
fibroblast of cardiac tissue
fibroblast of dermis
3
fibroblast of lung
3
hepatic stellate cell
3
hepatocyte(AFP)
3
immortal human breast epithelial cell line cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney connecting tubule epithelial cell
3
kidney cortex collecting duct intercalated cell
3
kidney distal convoluted tubule epithelial cell
3
kidney epithelial cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
left cardiac atrium
3
left renal cortex interstitium
3
left renal pelvis
3
mammary gland epithelial cell
3
memory B cell
3
mesenchymal stem cell
3
naive B cel
3
naive T cell
3
neurosphere
3
occipital lobe
3
osteoblast
3
prostate gland
3
renal cortical epithelial cell
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
smooth muscle cell of the coronary artery
3
temporal lobe
3
thoracic aorta
3
trophoblast
3
upper lobe of left lung
3
uterus
2
cardiac fibroblast
2
muscle of leg
2
22Rv1
2
Brodmann (1909) area 46
2
CD4-positive, alpha-beta T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
HepG2
2
Kupffer cell
2
LNCaP clone FGC
2
MIN6
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
activated CD4-positive, alpha-beta T cell
2
angular gyrus
Date released
2
May, 2021
1
May, 2020
Software used
2
r
1
chicago
Lab
3
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Kyle Gaulton, UCSD
Project
3
AMP
RFA
3
AMP
annotation_category!
cis-regulatory elements
assembly!
hg18
biosample_term_name!
fibroblast of dermis
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR072FLD
released
Annotation file set
: GSE118165 gene expression annotation of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579KZW
released
Annotation file set
: GSE118165 gene expression annotation of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR603PAJ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP