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Schema
Citing CMDGA
Clear Filters
Annotation type
3
gene expression
3
target gene predictions
Annotation Category
cis-regulatory elements
3
Gene expression levels
3
Target gene links
Annotation type Category
2
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
2
RNA-seq
1
pCHi-C
1
scRNA-seq
Available data
3
bed bed3+
3
tsv
1
txt
File set status
6
released
Genome assembly (visualization)
3
hg19
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
55
HeLa-S3
47
H1-hESC
32
islet of Langerhans
25
heart
25
monocyte
23
K562
23
kidney
23
stomach
20
brain
20
liver
19
A549
19
CD14-positive monocyte
19
HFFc6
19
adrenal gland
19
lung
18
epithelial cell of proximal tubule
18
hepatocyte
18
small intestine
17
muscle of arm
16
adipose tissue
16
glomerular endothelial cell
16
placenta
16
subcutaneous adipose tissue
15
endothelial cell
15
macrophage
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
12
B cell
12
body of pancreas
12
coronary artery
12
neural progenitor cell
12
regulatory T cell
12
tibial nerve
11
EndoC_BH1
11
T-helper 1 cell
11
T-helper 17 cell
11
cardiomyocytes
11
heart left ventricle
11
hematopoietic multipotent progenitor cell
11
pancreatic ductal cell
11
right atrium auricular region
11
right kidney
11
right lung
10
caudate nucleus
10
frontal cortex
10
induced pluripotent stem cell
10
pituitary stalk
10
renal cortex interstitium
10
renal pelvis
10
spleen
10
tibial artery
9
CD4-positive, alpha-beta memory T cell
9
adipocyte
9
cerebellum
9
extended pluripotent stem (EPS) cells
9
left kidney
9
neutrophil
9
omental fat pad
9
progenitor cell of endocrine pancreas
9
putamen
9
spinal cord
9
substantia nigra
8
GM12878
8
H9
8
T cell
8
ascending aorta
8
cardiomyocytes (cardiac muscle cell)
8
fibroblast
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
ovary
8
pancreatic acinar cell
8
pancreatic alpha cell
8
pancreatic beta cell
8
pancreatic delta cell
8
psoas muscle
7
Ammon's horn
7
CD8-positive, alpha-beta memory T cell
7
T-helper 2 cell
7
dendritic cell
7
glomerular visceral epithelial cell
7
heart right ventricle
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphocyte
7
mesenchymal stem cell
7
natural killer cell
7
pancreas
7
sigmoid colon
7
smooth muscle cell
7
trophoblast cell
6
CD8-positive, alpha-beta T cell
6
MCF-7
6
amygdala
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
hypothalamus
6
iPSC derived cell line
6
kidney interstitial cell
6
lymphoblastoid cell line
6
mononuclear cell
6
nucleus accumbens
6
olfactory receptor cell
6
retina
6
right lobe of liver
6
skeletal muscle tissue
6
thyroid gland
transverse colon
5
C1 segment of cervical spinal cord
5
aorta
5
endothelial cell of umbilical vein
5
gastrocnemius medialis
5
gastrocnemius medialis(Muscle - Skeletal)
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
mesangial cell
5
muscle of trunk
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreatic stellate cell
5
skeletal muscle myoblast
5
testis
4
CyT49
4
HUES8
4
adult endothelial progenitor cell
4
bone tissue
4
cardiac muscle cell
4
chorionic villus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
esophagus
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
gamma-delta T cell
4
keratinocyte
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
layer of hippocampus
4
mammary gland epithelial cell
4
nephron progenitor
4
osteoblast
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
skeletal muscle fiber
4
skin of body
4
smooth muscle cell of the coronary artery
4
uterus
4
vagina
4
vascular associated smooth muscle cell
4
visceral abdominal adipose tissue
3
HCT116
3
HepG2
3
Peyer's patch
3
S-shaped body
3
SK-N-SH
3
Schwann cell
3
T follicular helper cell
3
astrocyte
3
blood cell
3
breast epithelium
3
central memory CD8-positive, alpha-beta T cell
3
chorion membrane
3
dorsolateral prefrontal cortex
3
effector memory CD8-positive, alpha-beta T cell
3
endometrium adenocarcinoma
3
enterocyte
3
epithelial cell of esophagus
3
epithelial cell of prostate
3
esophagus muscularis mucosa
3
fibroblast of cardiac tissue
3
foreskin fibroblast
3
hepatic stellate cell
3
hepatocyte(AFP)
3
immortal human breast epithelial cell line cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney epithelial cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
left cardiac atrium
3
left renal cortex interstitium
3
left renal pelvis
3
memory B cell
3
mesendoderm
3
myofibroblast cell
3
naive B cel
Life stage
1
adult
Date released
4
May, 2021
1
August, 2021
1
May, 2020
Software used
3
r
2
abc
1
chicago
1
seurat
Lab
3
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
1
Katalin Susztak, Upenn
Project
6
AMP
1
ENCODE
1
T1D
RFA
5
AMP
1
AMP2
annotation_category!
cis-regulatory elements
biosample_term_name!
transverse colon
Showing 6 of 6 results
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Download
FileSet
DSR072FLD
released
Annotation file set
: GSE118165 gene expression annotation of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579KZW
released
Annotation file set
: GSE118165 gene expression annotation of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR512ARP
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for CD8-positive, alpha-beta T cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR603PAJ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP