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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
cis-regulatory elements
1
Target gene links
Annotation type Category
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
55
HeLa-S3
47
H1-hESC
31
islet of Langerhans
26
monocyte
23
K562
23
heart
23
stomach
22
kidney
20
endothelial cell
20
liver
19
A549
19
CD14-positive monocyte
19
HFFc6
19
adrenal gland
19
brain
19
lung
18
small intestine
17
epithelial cell of proximal tubule
17
hepatocyte
17
induced pluripotent stem cell
16
muscle of arm
16
placenta
15
adipose tissue
15
glomerular endothelial cell
15
subcutaneous adipose tissue
14
common myeloid progenitor, CD34-positive
14
large intestine
14
macrophage
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
13
regulatory T cell
12
B cell
12
EndoC_BH1
12
neural progenitor cell
12
pancreatic ductal cell
11
T-helper 1 cell
11
T-helper 17 cell
11
body of pancreas
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
11
right lung
11
smooth muscle cell
10
coronary artery
10
pancreatic delta cell
10
pericyte cell
10
pituitary stalk
10
right kidney
10
spleen
10
tibial nerve
9
CD4-positive, alpha-beta memory T cell
9
caudate nucleus
9
cerebellum
9
extended pluripotent stem (EPS) cells
9
frontal cortex
9
heart left ventricle
9
left kidney
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
neutrophil
9
omental fat pad
9
pancreatic acinar cell
9
pancreatic alpha cell
9
pancreatic beta cell
9
progenitor cell of endocrine pancreas
9
renal cortex interstitium
9
renal pelvis
9
right atrium auricular region
9
spinal cord
9
substantia nigra
8
CD8-positive, alpha-beta T cell
8
GM12878
8
H9
8
adipocyte
8
natural killer cell
8
ovary
8
psoas muscle
8
putamen
8
tibial artery
7
Ammon's horn
7
CD8-positive, alpha-beta memory T cell
7
T-helper 2 cell
7
ascending aorta
7
cardiomyocytes (cardiac muscle cell)
7
dendritic cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphocyte
7
mesenchymal stem cell
7
sigmoid colon
7
trophoblast cell
6
MCF-7
6
T cell
6
amygdala
6
anterior cingulate cortex
6
fibroblast
6
glomerular visceral epithelial cell
6
heart right ventricle
6
hypothalamus
6
iPSC derived cell line
6
kidney interstitial cell
6
lymphoblastoid cell line
6
mononuclear cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
nucleus accumbens
6
olfactory receptor cell
6
pancreas
6
pancreatic stellate cell
6
right lobe of liver
6
skeletal muscle tissue
6
thyroid gland
6
transverse colon
5
C1 segment of cervical spinal cord
5
aorta
5
astrocyte
5
cardiac precursors (cardiac muscle cell)
5
cerebellum (Hemisphere)
5
gastrocnemius medialis
5
gastrocnemius medialis(Muscle - Skeletal)
5
keratinocyte
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
memory B cell
5
mesangial cell
5
muscle of trunk
5
retina
5
testis
4
CD4-positive helper T cell
4
CyT49
4
HUES8
4
adult endothelial progenitor cell
4
bone tissue
4
cartilage tissue
4
chorionic villus
4
colon epithelial cell
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
endothelial cell of umbilical vein
4
esophagus
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
gamma-delta T cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
layer of hippocampus
4
mammary gland epithelial cell
4
nephron progenitor
4
osteoblast
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
skeletal muscle myoblast
4
skeletal muscle satellite cell
4
skin of body
4
smooth muscle cell of the coronary artery
4
type I muscle cell
4
type II muscle cell
4
uterus
4
vagina
4
visceral abdominal adipose tissue
3
CD4-positive, alpha-beta T cell
3
HCT116
3
HepG2
3
Peyer's patch
3
S-shaped body
3
SK-N-SH
3
T follicular helper cell
3
activated CD4-positive, alpha-beta T cell
3
blood cell
3
breast epithelium
3
central memory CD8-positive, alpha-beta T cell
3
chorion membrane
3
dorsolateral prefrontal cortex
3
effector memory CD8-positive, alpha-beta T cell
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
esophagus muscularis mucosa
3
foreskin fibroblast
3
hepatocyte(AFP)
3
immortal human breast epithelial cell line cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
luminal epithelial cell of mammary gland
3
mesendoderm
3
naive B cel
3
naive B cell
3
naive T cell
3
neurosphere
Organ
1
epithelium
1
mammary gland
Date released
1
May, 2021
Software used
1
abc
Lab
1
Jesse Engreitz, Stanford University
Project
1
AMP
RFA
1
AMP
annotation_category!
cis-regulatory elements
award.rfa!
KPMP
software_used.software.name!
deltasvm
Showing 1 of 1 results
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Download
FileSet
DSR379EHB
released
Annotation file set
: enhancer-gene predicton of mammary_epithelial_cell-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP