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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
Fine-mapped variants
2
target gene predictions
1
eQTL
1
gene expression
Annotation Category
cis-regulatory elements
4
Genetic variant effects
2
Target gene links
1
Gene expression levels
Annotation type Category
5
RNA-seq
2
DNase-seq
1
ATAC-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
Available data
5
tsv
2
bed bed3+
File set status
7
released
Genome assembly (visualization)
6
hg19
4
GRCh38
Organism
7
Homo sapiens
Biosample type
5
tissue
2
cell line
Biosample term
55
HeLa-S3
47
H1-hESC
32
islet of Langerhans
27
endothelial cell
26
monocyte
25
heart
23
K562
23
kidney
23
stomach
21
hepatocyte
21
macrophage
20
brain
20
liver
19
A549
19
CD14-positive monocyte
19
HFFc6
19
adrenal gland
19
lung
18
epithelial cell of proximal tubule
18
small intestine
17
B cell
17
induced pluripotent stem cell
17
muscle of arm
16
adipose tissue
16
fibroblast
16
glomerular endothelial cell
16
placenta
16
subcutaneous adipose tissue
15
smooth muscle cell
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
14
thymus
13
EndoC_BH1
13
left lung
13
muscle of back
13
pancreatic ductal cell
13
pericyte cell
13
regulatory T cell
12
adipocyte
12
body of pancreas
12
coronary artery
12
neural progenitor cell
12
tibial nerve
11
T-helper 1 cell
11
T-helper 17 cell
11
cardiomyocytes
11
heart left ventricle
11
hematopoietic multipotent progenitor cell
11
natural killer cell
11
pancreatic delta cell
11
right atrium auricular region
11
right kidney
11
right lung
10
caudate nucleus
10
frontal cortex
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pancreatic beta cell
10
pituitary stalk
10
renal cortex interstitium
10
renal pelvis
10
spleen
10
tibial artery
9
CD4-positive, alpha-beta memory T cell
9
cerebellum
9
extended pluripotent stem (EPS) cells
9
left kidney
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
neutrophil
9
omental fat pad
9
progenitor cell of endocrine pancreas
9
putamen
9
spinal cord
9
substantia nigra
8
CD8-positive, alpha-beta T cell
8
GM12878
8
H9
8
T cell
8
ascending aorta
8
cardiomyocytes (cardiac muscle cell)
8
dendritic cell
8
mast cell
8
ovary
8
psoas muscle
7
Ammon's horn
7
CD8-positive, alpha-beta memory T cell
7
T-helper 2 cell
7
glomerular visceral epithelial cell
7
heart right ventricle
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphocyte
7
mesenchymal stem cell
7
pancreas
7
sigmoid colon
7
trophoblast cell
6
MCF-7
6
amygdala
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
endothelial cell of lymphatic vessel
6
hypothalamus
6
iPSC derived cell line
6
kidney interstitial cell
6
lymphoblastoid cell line
6
mononuclear cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
nucleus accumbens
6
olfactory receptor cell
6
pancreatic stellate cell
6
retina
6
right lobe of liver
6
skeletal muscle tissue
6
thyroid gland
6
transverse colon
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
aorta
5
astrocyte
5
endothelial cell of umbilical vein
5
gastrocnemius medialis
5
gastrocnemius medialis(Muscle - Skeletal)
5
hepatic stellate cell
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
mammary gland epithelial cell
5
memory B cell
5
mesangial cell
5
muscle of trunk
5
skeletal muscle myoblast
5
testis
4
CD4-positive helper T cell
4
CyT49
4
HUES8
4
adult endothelial progenitor cell
4
bone tissue
4
cardiac muscle cell
4
cartilage tissue
4
chorionic villus
4
colon epithelial cell
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocardial cell
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
Disease term
1
colorectal adenocarcinoma
Organ
5
limb
5
musculature of body
2
intestine
2
large intestine
Life stage
6
adult
Date released
3
March, 2020
2
February, 2020
1
May, 2021
1
September, 2022
Software used
2
r
1
abc
1
gtex_eqtl:V8
1
gtex_finemapping_eQTL:caveman
1
gtex_finemapping_eQTL:caviar
1
gtex_finemapping_eQTL:dapg
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
annotation_category!
cis-regulatory elements
organ_slims!
skin of body
Showing 7 of 7 results
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Download
FileSet
DSR883VDG
released
Annotation file set
: Target gene predictions for BSS00708 HT-29 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR797VJC
released
Annotation file set
: enhancer-gene predicton of HT29 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR809BGG
released
Annotation file set
: Fine-mapping results from DAPG of gastrocnemius medialis(Muscle - Skeletal) for GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR573OQV
released
Annotation file set
: Fine-mapping results from CAVIAR of gastrocnemius medialis(Muscle - Skeletal) for GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR012LHM
released
Annotation file set
: Fine-mapping results from CaVEMaN of gastrocnemius medialis(Muscle - Skeletal) for GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR192JMP
released
Annotation file set
: Gene expression summary of TPM of skeletal muscle from GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR222BED
released
Annotation file set
: eQTL of gastrocnemius medialis(Muscle - Skeletal) for GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP