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Schema
Citing CMDGA
Clear Filters
Annotation type
1
differential activity
1
gene expression
1
variant allelic effects
Annotation Category
2
Gene expression levels
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
1
RNA-seq
1
snATAC-seq
1
snRNA-seq
Available data
1
bed bed3+
1
tsv
File set status
3
released
Genome assembly (visualization)
2
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Biosample term
51
HeLa-S3
37
H1-hESC
19
HFFc6
16
K562
9
extended pluripotent stem (EPS) cells
9
progenitor cell of endocrine pancreas
6
GM12878
6
H9
6
fibroblast
6
hepatocyte
6
lymphocyte
6
olfactory receptor cell
5
T-helper 1 cell
5
regulatory T cell
4
CyT49
4
HUES8
4
T-helper 17 cell
4
endothelial cell
4
endothelial cell of hepatic sinusoid
4
iPSC derived cell line
4
pancreatic ductal cell
4
skeletal muscle fiber
4
smooth muscle cell
3
enterocyte
3
hepatocyte(AFP)
3
macrophage
3
myofibroblast cell
2
HCT116
2
Schwann cell
2
T cell
2
adipocyte
2
basal cell
2
epithelial cell of esophagus
2
goblet cell
2
mesenchymal stem cell
2
type I muscle cell
2
type II muscle cell
2
vascular associated smooth muscle cell
1
B-1a B cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
GM18486
1
GM18505
1
GM18507
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
Satellite Cells, Skeletal Muscle
1
T-helper 2 cell
1
aorta wall
1
astrocyte
1
bronchial goblet cell
1
cardiac muscle cell
1
central memory CD4-positive, alpha-beta T cell
1
central memory CD8-positive, alpha-beta T cell
1
cortical cell of adrenal gland
1
effector memory CD4-positive, alpha-beta T cell
1
effector memory CD8-positive, alpha-beta T cell
1
excitatory neuron
1
glial cell
1
granulosa cell
1
hippocampal neuron
1
islet of Langerhans
1
keratinocyte
1
leukocyte
1
liver
1
lower motor neuron
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mammary gland epithelial cell
1
mast cell
1
memory B cell
1
mesothelial cell
1
naive B cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
nephron tubule
1
neural cell
1
pancreatic acinar cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic endocrine cell
1
pancreatic polypeptide-secreting cell
1
parietal cell
1
peptic cell
1
skeletal muscle
1
skeletal muscle satellite cell
1
subcutaneous adipose tissue
1
thyroid follicular cell
1
type II pneumocyte
1
visceral abdominal adipose tissue
Disease term
1
coronary artery disease
Organ
2
connective tissue
1
liver
Life stage
1
adult
Date released
9
September, 2022
6
August, 2021
5
May, 2021
3
February, 2024
2
March, 2020
1
February, 2020
1
February, 2021
1
January, 2022
1
May, 2022
Software used
1
deeptools
1
deltasvm
1
deseq2
1
r
1
samtools
1
umitools
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
3
AMP
RFA
2
AMP
1
AMP2
annotation_category!
cis-regulatory elements
biosample_term_name!
parathyroid adenoma
Showing 3 of 3 results
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Download
FileSet
DSR054IUR
released
Annotation file set
: Tissue-specific differentially expressed genes for CAD case/control status from STARNET bulk RNA seq data for liver (FDR=10%)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP