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Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
1
caQTL
1
eQTL
1
gene expression
Annotation Category
cis-regulatory elements
4
Target gene links
2
Genetic variant effects
1
Gene expression levels
Annotation type Category
3
DNase-seq
2
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
pCHi-C
1
snATAC-seq
1
snRNA-seq
Available data
6
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
3
in vitro differentiated cells
3
primary cell
1
stem cell
Biosample term
16
adipose tissue
16
subcutaneous adipose tissue
12
fibroblast
10
pericyte cell
9
adipocyte
9
omental fat pad
7
mesenchymal stem cell
6
pancreatic stellate cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Fibroblast
5
Mesangial Cell
5
mesangial cell
4
adult endothelial progenitor cell
4
bone tissue
4
cartilage tissue
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
osteoblast
4
visceral abdominal adipose tissue
3
foreskin fibroblast
3
hepatic stellate cell
3
pancreatic quiescent stellate cell
3
skin fibroblast
2
cardiac fibroblast
2
articular chondrocyte
2
fat cell
2
fibroblast of the aortic adventitia
1
omental fat pad
1
Adipose SGBS cell line (adipocyte)
1
GM23248
1
HT1080
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
activated pancreatic stellate cell
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
beige adipocyte
1
brain pericyte
1
cardiac atrium fibroblast
1
cardiac fibroblast
1
cardiac ventricle fibroblast
1
fibroblast of arm
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
kidney interstitial fibroblast
1
luteal cell
1
mesenchymal stem cell of adipose
1
pericardium fibroblast
1
quiescent pancreatic stellate cell
1
stromal cell
1
stromal cell of bone marrow
1
white adipose cell
1
white adipose tissue
Organ
10
brain
7
connective tissue
Life stage
1
adult
1
embryonic
Date released
2
February, 2024
2
September, 2022
1
March, 2020
1
May, 2021
1
October, 2022
Software used
3
r
1
abc
1
deeptools
1
eigenmt
1
nospecificsoft_customcode
1
qTLtools
1
rasqual
1
samtools
1
umitools
Lab
3
AMP-T2D consortium
3
Stephen Parker, UMich
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
4
AMP
3
AMP2
annotation_category!
cis-regulatory elements
biosample_term_name!
aorta
Showing 7 of 7 results
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Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP