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Schema
Citing CMDGA
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Annotation type
7
target gene predictions
1
variant allelic effects
Annotation Category
cis-regulatory elements
7
Target gene links
1
Genetic variant effects
Annotation type Category
7
DNase-seq
5
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
File set status
8
released
Genome assembly (visualization)
7
hg19
Organism
8
Homo sapiens
Biosample type
7
tissue
1
in vitro differentiated cells
primary cell
Biosample term
55
HeLa-S3
47
H1-hESC
32
islet of Langerhans
25
heart
23
K562
23
kidney
23
stomach
20
brain
20
liver
19
A549
19
HFFc6
19
adrenal gland
19
lung
18
small intestine
17
induced pluripotent stem cell
17
muscle of arm
16
adipose tissue
16
placenta
16
subcutaneous adipose tissue
14
large intestine
14
muscle of leg
14
thymus
13
EndoC_BH1
13
left lung
13
muscle of back
12
body of pancreas
12
coronary artery
12
neural progenitor cell
12
tibial nerve
11
cardiomyocytes
11
heart left ventricle
11
hematopoietic multipotent progenitor cell
11
right atrium auricular region
11
right kidney
11
right lung
10
caudate nucleus
10
frontal cortex
10
pituitary stalk
10
renal cortex interstitium
10
renal pelvis
10
spleen
10
tibial artery
9
cerebellum
9
extended pluripotent stem (EPS) cells
9
left kidney
9
omental fat pad
9
progenitor cell of endocrine pancreas
9
putamen
9
spinal cord
9
substantia nigra
8
GM12878
8
H9
8
ascending aorta
8
cardiomyocytes (cardiac muscle cell)
8
ovary
8
psoas muscle
7
Ammon's horn
7
adipocyte
7
heart right ventricle
7
lymphocyte
7
pancreas
7
sigmoid colon
6
MCF-7
6
amygdala
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
dendritic cell
6
hypothalamus
6
iPSC derived cell line
6
lymphoblastoid cell line
6
nucleus accumbens
6
retina
6
right lobe of liver
6
skeletal muscle tissue
6
thyroid gland
6
transverse colon
5
C1 segment of cervical spinal cord
5
aorta
5
gastrocnemius medialis
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
muscle of trunk
5
testis
4
CyT49
4
HUES8
4
bone tissue
4
cartilage tissue
4
chorionic villus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
esophagus
4
layer of hippocampus
4
mesenchymal stem cell
4
skin of body
4
uterus
4
vagina
4
visceral abdominal adipose tissue
3
HCT116
3
HepG2
3
Peyer's patch
3
SK-N-SH
3
breast epithelium
3
chorion membrane
3
dorsolateral prefrontal cortex
3
endometrium adenocarcinoma
3
esophagus muscularis mucosa
3
hepatocyte(AFP)
3
immortal human breast epithelial cell line cell
3
left cardiac atrium
3
left renal cortex interstitium
3
left renal pelvis
3
mesendoderm
3
occipital lobe
3
pancreatic ductal cell
3
prostate gland
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
temporal lobe
3
thoracic aorta
3
trophoblast
3
upper lobe of left lung
2
muscle of leg
2
22Rv1
2
A673
2
BJAB cell
2
Brodmann (1909) area 46
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MIN6
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
T47D
2
THP-1
2
U937
2
angular gyrus
2
bipolar neuron
2
blood
2
cingulate gyrus
2
colonic mucosa
2
duodenal mucosa
2
endodermal cell
2
esophagus squamous epithelium
2
eye
2
globus pallidus
2
iPS DF 19.11
2
limb
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
medulla oblongata
2
midbrain
2
middle frontal gyrus
2
minor salivary gland
2
mucosa of rectum
2
muscle
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
parathyroid adenoma
2
pons
2
smooth muscle cell
2
stomach smooth muscle
2
superior temporal gyrus
2
tissue
2
tongue
2
trophoblast cell
2
urinary bladder
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
8988T
1
A172
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
Adipose SGBS cell line (adipocyte)
Organ
5
limb
5
musculature of body
2
brain
Life stage
6
adult
Date released
5
September, 2022
1
March, 2020
1
May, 2020
1
May, 2021
Software used
5
r
1
abc
1
deltasvm
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_category!
cis-regulatory elements
biosample_type!
primary cell
Showing 8 of 8 results
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Download
FileSet
DSR879GYA
released
Annotation file set
: Target gene predictions for BSS01451 pons from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR260PVD
released
Annotation file set
: Target gene predictions for BSS00379 gastrocnemius medialis from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR038JYU
released
Annotation file set
: Target gene predictions for BSS00378 gastrocnemius medialis from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR502AWB
released
Annotation file set
: Target gene predictions for BSS00377 gastrocnemius medialis from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR060RIP
released
Annotation file set
: Target gene predictions for BSS00376 gastrocnemius medialis from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR734DGW
released
Annotation file set
: enhancer-gene predicton of gastrocnemius_medialis-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR982FHO
released
Annotation file set
: Variant allelic effects of pons ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR929DUM
released
Annotation file set
: A target gene prediction annotation in Human Human ES Cells of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP