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Schema
Citing CMDGA
Clear Filters
Annotation type
1
gene expression
1
target gene predictions
Annotation Category
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
1
RNA-seq
1
pCHi-C
Available data
1
bed bed3+
1
tsv
File set status
2
released
Genome assembly (visualization)
1
hg19
Organism
2
Homo sapiens
Biosample type
1
in vitro differentiated cells
1
primary cell
Biosample term
55
HeLa-S3
47
H1-hESC
32
islet of Langerhans
26
monocyte
25
heart
23
K562
23
kidney
23
stomach
20
brain
20
liver
19
A549
19
CD14-positive monocyte
19
HFFc6
19
adrenal gland
19
lung
18
small intestine
17
induced pluripotent stem cell
17
macrophage
17
muscle of arm
16
adipose tissue
16
placenta
16
subcutaneous adipose tissue
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
13
regulatory T cell
13
smooth muscle cell
12
B cell
12
body of pancreas
12
coronary artery
12
fibroblast
12
neural progenitor cell
12
tibial nerve
11
T-helper 1 cell
11
T-helper 17 cell
11
cardiomyocytes
11
heart left ventricle
11
hematopoietic multipotent progenitor cell
11
right atrium auricular region
11
right kidney
11
right lung
10
caudate nucleus
10
frontal cortex
10
pericyte cell
10
pituitary stalk
10
renal cortex interstitium
10
renal pelvis
10
spleen
10
tibial artery
9
CD4-positive, alpha-beta memory T cell
9
adipocyte
9
cerebellum
9
extended pluripotent stem (EPS) cells
9
left kidney
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
neutrophil
9
omental fat pad
9
progenitor cell of endocrine pancreas
9
putamen
9
spinal cord
9
substantia nigra
8
CD8-positive, alpha-beta T cell
8
GM12878
8
H9
8
T cell
8
ascending aorta
8
cardiomyocytes (cardiac muscle cell)
8
natural killer cell
8
ovary
8
psoas muscle
7
Ammon's horn
7
CD8-positive, alpha-beta memory T cell
7
T-helper 2 cell
7
dendritic cell
7
heart right ventricle
7
lymphocyte
7
mesenchymal stem cell
7
pancreas
7
sigmoid colon
7
trophoblast cell
6
MCF-7
6
amygdala
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
hypothalamus
6
iPSC derived cell line
6
kidney interstitial cell
6
lymphoblastoid cell line
6
mononuclear cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
nucleus accumbens
6
olfactory receptor cell
6
pancreatic stellate cell
6
retina
6
right lobe of liver
6
skeletal muscle tissue
6
thyroid gland
6
transverse colon
5
Adaptive / Maladaptive / Repairing Fibroblast
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Fibroblast
5
M2 Macrophage
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
aorta
5
astrocyte
5
gastrocnemius medialis
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
memory B cell
5
mesangial cell
5
muscle of trunk
5
skeletal muscle myoblast
5
testis
4
CD4-positive helper T cell
4
CyT49
4
HUES8
4
adult endothelial progenitor cell
4
bone tissue
4
cardiac muscle cell
4
cartilage tissue
4
chorionic villus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
esophagus
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
gamma-delta T cell
4
layer of hippocampus
4
nephron progenitor
4
osteoblast
4
pancreatic MUC5B+ductal cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
skeletal muscle fiber
4
skeletal muscle satellite cell
4
skin of body
4
smooth muscle cell of the coronary artery
4
type I muscle cell
4
type II muscle cell
4
uterus
4
vagina
4
vascular associated smooth muscle cell
4
visceral abdominal adipose tissue
3
CD4-positive, alpha-beta T cell
3
Cycling Mononuclear Phagocyte
3
HCT116
3
HepG2
3
Mast Cell
3
Peyer's patch
3
SK-N-SH
3
Schwann cell
3
T follicular helper cell
3
activated CD4-positive, alpha-beta T cell
3
basal cell
3
blood cell
3
central memory CD8-positive, alpha-beta T cell
3
chorion membrane
3
dorsolateral prefrontal cortex
3
effector memory CD8-positive, alpha-beta T cell
3
endometrium adenocarcinoma
3
esophagus muscularis mucosa
3
foreskin fibroblast
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
kidney cell
3
kidney resident macrophage
3
left cardiac atrium
3
left renal cortex interstitium
3
left renal pelvis
3
mast cell
3
mesendoderm
3
myofibroblast cell
3
naive B cel
3
naive B cell
3
naive T cell
Organ
epithelium
10
pancreas
Date released
1
March, 2020
1
May, 2021
Software used
1
nospecificsoft_customcode
1
r
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
annotation_category!
cis-regulatory elements
organ_slims!
epithelium
Showing 2 of 2 results
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Download
FileSet
DSR740DPX
released
Annotation file set
: Gene expression annotation of embryonic stem cell Undifferentiated ES cell from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR929DUM
released
Annotation file set
: A target gene prediction annotation in Human Human ES Cells of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP