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Schema
Citing CMDGA
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Annotation type
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
1
Target gene links
Annotation type Category
1
RNA-seq
1
pCHi-C
1
snRNA-seq
Available data
2
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
in vitro differentiated cells
2
primary cell
1
stem cell
Biosample term
55
HeLa-S3
47
H1-hESC
32
islet of Langerhans
26
monocyte
25
heart
23
K562
23
kidney
23
stomach
20
brain
20
endothelial cell
19
A549
19
CD14-positive monocyte
19
HFFc6
19
adrenal gland
19
liver
19
lung
18
epithelial cell of proximal tubule
18
hepatocyte
18
small intestine
17
macrophage
17
muscle of arm
16
adipose tissue
16
glomerular endothelial cell
16
placenta
16
subcutaneous adipose tissue
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
14
thymus
13
EndoC_BH1
13
left lung
13
muscle of back
13
regulatory T cell
12
B cell
12
body of pancreas
12
coronary artery
12
fibroblast
12
tibial nerve
11
T-helper 1 cell
11
T-helper 17 cell
11
heart left ventricle
11
pancreatic delta cell
11
right atrium auricular region
11
right kidney
11
right lung
10
caudate nucleus
10
frontal cortex
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pancreatic beta cell
10
pancreatic ductal cell
10
pericyte cell
10
pituitary stalk
10
renal cortex interstitium
10
renal pelvis
10
smooth muscle cell
10
spleen
10
tibial artery
9
CD4-positive, alpha-beta memory T cell
9
cerebellum
9
left kidney
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
neutrophil
9
omental fat pad
9
putamen
9
spinal cord
9
substantia nigra
8
CD8-positive, alpha-beta T cell
8
GM12878
8
H9
8
T cell
8
ascending aorta
8
induced pluripotent stem cell
8
natural killer cell
8
ovary
8
psoas muscle
7
Ammon's horn
7
CD8-positive, alpha-beta memory T cell
7
T-helper 2 cell
7
glomerular visceral epithelial cell
7
heart right ventricle
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphocyte
7
pancreas
7
sigmoid colon
6
MCF-7
6
amygdala
6
anterior cingulate cortex
6
cerebellum (Hemisphere)
6
hypothalamus
6
iPSC derived cell line
6
keratinocyte
6
kidney interstitial cell
6
lymphoblastoid cell line
6
mononuclear cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
nucleus accumbens
6
olfactory receptor cell
6
pancreatic stellate cell
6
retina
6
right lobe of liver
6
skeletal muscle tissue
6
thyroid gland
6
transverse colon
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
aorta
5
astrocyte
5
endothelial cell of umbilical vein
5
gastrocnemius medialis
5
gastrocnemius medialis(Muscle - Skeletal)
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
mammary gland epithelial cell
5
memory B cell
5
mesangial cell
5
muscle of trunk
5
trophoblast cell
4
CD4-positive helper T cell
4
CyT49
4
HUES8
4
adult endothelial progenitor cell
4
bone tissue
4
cartilage tissue
4
chorionic villus
4
colon epithelial cell
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
esophagus
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
gamma-delta T cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
layer of hippocampus
4
nephron progenitor
4
osteoblast
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
Organ
3
connective tissue
Date released
2
February, 2024
1
March, 2020
Software used
1
deeptools
eigenmt
1
nospecificsoft_customcode
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
2
Stephen Parker, UMich
1
AMP-T2D consortium
Project
3
AMP
RFA
2
AMP2
1
AMP
annotation_category!
cis-regulatory elements
biosample_type!
in vitro differentiated cells
organ_slims!
testis
software_used.software.name!
eigenmt
Showing 3 of 3 results
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Download
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP