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Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
1
caQTL
1
eQTL
1
gene expression
Annotation Category
cis-regulatory elements
4
Target gene links
2
Genetic variant effects
1
Gene expression levels
Annotation type Category
3
DNase-seq
2
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
pCHi-C
1
snATAC-seq
1
snRNA-seq
Available data
6
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
3
in vitro differentiated cells
3
primary cell
1
stem cell
Biosample term
55
HeLa-S3
47
H1-hESC
26
monocyte
25
islet of Langerhans
24
heart
23
K562
23
stomach
20
brain
20
liver
19
A549
19
CD14-positive monocyte
19
HFFc6
19
adrenal gland
19
lung
18
endothelial cell
18
small intestine
17
macrophage
17
muscle of arm
16
hepatocyte
16
kidney
16
placenta
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
14
thymus
13
EndoC_BH1
13
adipose tissue
13
left lung
13
muscle of back
13
pancreatic ductal cell
13
regulatory T cell
13
smooth muscle cell
12
B cell
12
body of pancreas
12
coronary artery
12
fibroblast
12
neural progenitor cell
12
subcutaneous adipose tissue
12
tibial nerve
11
T-helper 1 cell
11
T-helper 17 cell
11
heart left ventricle
11
hematopoietic multipotent progenitor cell
11
pancreatic delta cell
11
right atrium auricular region
11
right kidney
11
right lung
10
caudate nucleus
10
frontal cortex
10
pancreatic acinar cell
10
pericyte cell
10
pituitary stalk
10
renal cortex interstitium
10
renal pelvis
10
spleen
10
tibial artery
9
CD4-positive, alpha-beta memory T cell
9
cerebellum
9
extended pluripotent stem (EPS) cells
9
left kidney
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
neutrophil
9
omental fat pad
9
pancreatic beta cell
9
progenitor cell of endocrine pancreas
9
putamen
9
spinal cord
9
substantia nigra
8
CD8-positive, alpha-beta T cell
8
GM12878
8
H9
8
T cell
8
adipocyte
8
induced pluripotent stem cell
8
ovary
8
pancreatic alpha cell
8
psoas muscle
7
Ammon's horn
7
CD8-positive, alpha-beta memory T cell
7
T-helper 2 cell
7
ascending aorta
7
dendritic cell
7
heart right ventricle
7
lymphocyte
7
mesenchymal stem cell
7
natural killer cell
7
pancreas
7
sigmoid colon
7
trophoblast cell
6
MCF-7
6
amygdala
6
anterior cingulate cortex
6
cardiomyocytes (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
hypothalamus
6
iPSC derived cell line
6
keratinocyte
6
lymphoblastoid cell line
6
mononuclear cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
nucleus accumbens
6
olfactory receptor cell
6
pancreatic stellate cell
6
retina
6
right lobe of liver
6
thyroid gland
6
transverse colon
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
aorta
5
astrocyte
5
endothelial cell of umbilical vein
5
gastrocnemius medialis
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
mammary gland epithelial cell
5
memory B cell
5
muscle of trunk
5
skeletal muscle myoblast
5
skeletal muscle tissue
5
testis
4
CD4-positive helper T cell
4
CyT49
4
HUES8
4
cardiac muscle cell
4
cartilage tissue
4
chorionic villus
4
colon epithelial cell
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
epithelial cell of proximal tubule
4
esophagus
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
glomerular endothelial cell
4
layer of hippocampus
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
Organ
7
connective tissue
Life stage
1
adult
1
embryonic
Date released
2
February, 2024
2
September, 2022
1
March, 2020
1
May, 2021
1
October, 2022
Software used
3
r
1
abc
1
deeptools
1
eigenmt
1
nospecificsoft_customcode
1
qTLtools
1
rasqual
1
samtools
1
umitools
Lab
3
AMP-T2D consortium
3
Stephen Parker, UMich
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
4
AMP
3
AMP2
annotation_category!
cis-regulatory elements
files.file_type!
bed gappedPeak
month_released!
February, 2021
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP