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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
Annotation Category
cis-regulatory elements
3
Target gene links
Annotation type Category
2
DNase-seq
1
ATAC-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
stem cell
Biosample term
55
HeLa-S3
47
H1-hESC
31
islet of Langerhans
25
monocyte
23
K562
23
heart
23
stomach
22
endothelial cell
22
kidney
20
liver
19
A549
19
CD14-positive monocyte
19
HFFc6
19
adrenal gland
19
brain
19
lung
18
small intestine
17
epithelial cell of proximal tubule
17
induced pluripotent stem cell
16
macrophage
16
muscle of arm
16
placenta
15
adipose tissue
15
glomerular endothelial cell
15
subcutaneous adipose tissue
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
13
hepatocyte
13
left lung
13
muscle of back
13
pancreatic ductal cell
13
regulatory T cell
13
smooth muscle cell
13
thymus
12
EndoC_BH1
12
fibroblast
12
neural progenitor cell
11
B cell
11
T-helper 1 cell
11
T-helper 17 cell
11
body of pancreas
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
11
right lung
10
coronary artery
10
pancreatic acinar cell
10
pericyte cell
10
pituitary stalk
10
right kidney
10
spleen
10
tibial nerve
9
CD4-positive, alpha-beta memory T cell
9
adipocyte
9
caudate nucleus
9
cerebellum
9
extended pluripotent stem (EPS) cells
9
frontal cortex
9
heart left ventricle
9
left kidney
9
omental fat pad
9
pancreatic delta cell
9
progenitor cell of endocrine pancreas
9
renal cortex interstitium
9
renal pelvis
9
right atrium auricular region
9
spinal cord
9
substantia nigra
8
GM12878
8
H9
8
T cell
8
naive thymus-derived CD4-positive, alpha-beta T cell
natural killer cell
8
neutrophil
8
ovary
8
pancreatic alpha cell
8
pancreatic beta cell
8
psoas muscle
8
putamen
8
tibial artery
7
Ammon's horn
7
CD8-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
T-helper 2 cell
7
ascending aorta
7
cardiomyocytes (cardiac muscle cell)
7
dendritic cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphocyte
7
mesenchymal stem cell
7
sigmoid colon
7
trophoblast cell
6
MCF-7
6
amygdala
6
anterior cingulate cortex
6
glomerular visceral epithelial cell
6
heart right ventricle
6
hypothalamus
6
iPSC derived cell line
6
keratinocyte
6
kidney interstitial cell
6
lymphoblastoid cell line
6
mononuclear cell
6
nucleus accumbens
6
olfactory receptor cell
6
pancreas
6
pancreatic stellate cell
6
right lobe of liver
6
skeletal muscle tissue
6
thyroid gland
6
transverse colon
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
aorta
5
astrocyte
5
cardiac precursors (cardiac muscle cell)
5
cerebellum (Hemisphere)
5
gastrocnemius medialis
5
gastrocnemius medialis(Muscle - Skeletal)
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
mammary gland epithelial cell
5
memory B cell
5
mesangial cell
5
muscle of trunk
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
retina
5
testis
4
CD4-positive helper T cell
4
CyT49
4
HUES8
4
bone tissue
4
cartilage tissue
4
chorionic villus
4
colon epithelial cell
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
esophagus
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
gamma-delta T cell
4
kidney connecting tubule epithelial cell
Life stage
1
embryonic
Date released
1
March, 2020
1
May, 2021
1
September, 2022
Software used
1
abc
1
nospecificsoft_customcode
1
r
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
annotation_category!
cis-regulatory elements
biosample_term_name!
natural killer cell
files.file_type!
bigWig
month_released!
May, 2020
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP