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Annotation type
1
target gene predictions
Annotation Category
cis-regulatory elements
1
Target gene links
Annotation type Category
1
ATAC-seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
25
monocyte
21
endothelial cell
19
CD14-positive monocyte
18
epithelial cell of proximal tubule
18
hepatocyte
16
glomerular endothelial cell
16
macrophage
14
common myeloid progenitor, CD34-positive
13
regulatory T cell
12
B cell
12
fibroblast
11
T-helper 1 cell
11
T-helper 17 cell
11
pancreatic delta cell
11
smooth muscle cell
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pancreatic beta cell
10
pancreatic ductal cell
10
pericyte cell
CD4-positive, alpha-beta memory T cell
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
neutrophil
8
CD8-positive, alpha-beta T cell
8
T cell
8
natural killer cell
7
CD8-positive, alpha-beta memory T cell
7
T-helper 2 cell
7
kidney loop of Henle thin ascending limb epithelial cell
6
glomerular visceral epithelial cell
6
keratinocyte
6
kidney interstitial cell
6
mononuclear cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
olfactory receptor cell
6
pancreatic stellate cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
astrocyte
5
endothelial cell of umbilical vein
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mammary gland epithelial cell
5
memory B cell
5
mesangial cell
5
trophoblast cell
4
CD4-positive helper T cell
4
adult endothelial progenitor cell
4
endothelial cell of hepatic sinusoid
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
gamma-delta T cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
nephron progenitor
4
osteoblast
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
skeletal muscle fiber
4
skeletal muscle myoblast
4
skeletal muscle satellite cell
4
type I muscle cell
4
type II muscle cell
4
vascular associated smooth muscle cell
3
CD4-positive, alpha-beta T cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
T follicular helper cell
3
activated CD4-positive, alpha-beta T cell
3
basal cell
3
blood cell
3
cardiac muscle cell
3
central memory CD8-positive, alpha-beta T cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
effector memory CD8-positive, alpha-beta T cell
3
enterocyte
3
epithelial cell of esophagus
3
epithelial cell of prostate
3
hepatic stellate cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney epithelial cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
luminal epithelial cell of mammary gland
3
mast cell
3
mesenchymal stem cell
3
myofibroblast cell
3
naive B cel
3
naive B cell
3
naive T cell
3
neurosphere
3
pancreatic A cell
3
pancreatic quiescent stellate cell
3
renal cortical epithelial cell
3
skin fibroblast
3
smooth muscle cell of the coronary artery
3
type B pancreatic cell
3
type II pneumocyte
2
cardiac fibroblast
2
Kupffer cell
2
T-cell
2
activated CD8-positive, alpha-beta T cell
2
adipocyte
2
alternatively activated macrophage
2
articular chondrocyte
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
choroid plexus epithelial cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
enteric smooth muscle cell
2
erythroblast
2
fat cell
2
fibroblast of breast
2
fibroblast of the aortic adventitia
2
foreskin fibroblast
2
gabaergic neuron
2
glutamatergic neuron
2
goblet cell
2
inflammatory macrophage
2
kidney capillary endothelial cell
2
kidney inner medulla collecting duct intercalated cell
2
leukocyte
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
Organ
1
epithelium
1
lung
Date released
1
November, 2021
Software used
1
abc
Lab
1
Bing Ren, UCSD
Project
1
ENCODE
RFA
1
ENCODE3
annotation_category!
cis-regulatory elements
biosample_term_name!
CD4-positive, alpha-beta memory T cell
Degenerative Proximal Tubule Epithelial Cell
Showing 1 of 1 results
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Download
FileSet
DSR923OSI
released
Annotation file set
: Target gene predictions of Alveolar Type 1 (AT1) Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE