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Schema
Citing CMDGA
Clear Filters
Annotation type
3
gene expression
Annotation Category
19
cis-regulatory elements
7
Target gene links
5
Genetic variant effects
3
Gene expression levels
Annotation type Category
scRNA-seq
2
RNA-seq
1
snRNA-seq
Available data
2
tsv
File set status
3
released
Genome assembly (visualization)
1
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
16
induced pluripotent stem cell
15
epithelial cell of proximal tubule
13
glomerular endothelial cell
11
cardiomyocytes
10
hepatocyte
9
extended pluripotent stem (EPS) cells
9
islet of Langerhans
9
progenitor cell of endocrine pancreas
8
H1-hESC
7
kidney
7
kidney loop of Henle thin ascending limb epithelial cell
7
neural progenitor cell
6
subcutaneous adipose tissue
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T-helper 1 cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
regulatory T cell
4
T-helper 17 cell
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
endothelial cell of hepatic sinusoid
4
glomerular visceral epithelial cell
4
mesangial cell
3
Cycling Mononuclear Phagocyte
3
EndoC_BH1
3
Mast Cell
3
adipose tissue
3
adult endothelial progenitor cell
3
endothelial cell
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney connecting tubule epithelial cell
3
kidney cortex collecting duct intercalated cell
3
kidney distal convoluted tubule epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney interstitial cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
pancreatic ductal cell
3
visceral abdominal adipose tissue
2
adipocyte
2
body of pancreas
2
cerebellum
2
frontal cortex
2
heart
2
kidney inner medulla collecting duct intercalated cell
2
liver
2
omental fat pad
2
osteoblast
2
right atrium auricular region
2
skeletal muscle fiber
2
skeletal muscle satellite cell
2
smooth muscle cell of the coronary artery
2
tibial nerve
2
vascular associated smooth muscle cell
1
Ammon's horn
1
B-1a B cell
1
C1 segment of cervical spinal cord
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
S-shaped body
1
T-helper 2 cell
1
adrenal gland
1
amygdala
1
anterior cingulate cortex
1
aorta wall
1
ascending aorta
1
astrocyte
1
bladder
1
brain
1
breast - mammary tissue
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
cardiomyocytes (cardiac muscle cell)
1
caudate nucleus
1
cells - EBV-transformed lymphocytes
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
central memory CD8-positive, alpha-beta T cell
1
cerebellum (Hemisphere)
1
cervix - ectocervix
1
cervix - endocervix
1
colon - sigmoid
1
colon - transverse
1
coronary artery
1
diencephalon
1
dorsolateral prefrontal cortex
1
effector memory CD4-positive, alpha-beta T cell
1
effector memory CD8-positive, alpha-beta T cell
1
endothelial cell of coronary artery
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
excitatory neuron
1
fallopian tube
1
gastrocnemius medialis(Muscle - Skeletal)
1
glial cell
1
heart left ventricle
1
hippocampal neuron
1
hypothalamus
1
kidney - cortex
1
kidney - medulla
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
left ventricle myocardium
1
leukocyte
1
lower motor neuron
1
lung
1
memory B cell
1
mesenchymal stem cell
1
mesenchymal stem cell of adipose
1
metanephros
1
minor salivary gland
1
naive B cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
nephron progenitor
1
neural cell
1
nucleus accumbens
1
occipital lobe
1
ovary
1
pancreatic alpha cell
1
parietal lobe
1
pericardium fibroblast
1
pituitary
1
prostate
1
putamen
1
renal cortical epithelial cell
1
retina
1
right lobe of liver
1
skeletal muscle
1
skeletal muscle myoblast
1
skeletal muscle tissue
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
small intestine - terminal Ileum
1
smooth muscle cell
1
spleen
1
stomach
1
substantia nigra
1
temporal lobe
Organ
3
epithelium
Life stage
1
adult
1
fetal
Date released
2
February, 2021
1
February, 2024
May, 2021
Software used
3
r
1
deeptools
1
samtools
1
umitools
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
2
AMP
1
AMP2
annotation_type_category!
scRNA-seq
biosample_term_name!
SK-N-DZ
month_released!
May, 2021
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR251UJD
released
Annotation file set
: Cell type gene expression mean TPM and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR946TAA
released
Annotation file set
: Gene expression levels (pseudobulks UMIs) of End from GSE114530 scRNAseq fetal kidney
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR365BTF
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver Central Venous LSECs from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP