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Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
1
accessible chromatin
1
histone modifications
Annotation Category
6
Gene expression levels
4
cis-regulatory elements
1
Genetic variant effects
0
Target gene links
Annotation type Category
3
ChIP-seq
1
snATAC-seq
Available data
4
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
105
monocyte
85
heart
82
stomach
69
brain
66
lung
66
muscle of arm
65
kidney
63
HeLa-S3
61
A549
61
small intestine
58
adrenal gland
58
placenta
57
muscle of leg
55
large intestine
54
muscle of back
53
common myeloid progenitor, CD34-positive
52
left lung
47
thymus
45
right lung
44
H1-hESC
44
neural progenitor cell
42
CD8-positive, alpha-beta T cell
42
hematopoietic multipotent progenitor cell
41
right kidney
39
K562
39
renal cortex interstitium
39
renal pelvis
37
B cell
37
retina
36
left kidney
36
liver
33
spinal cord
32
CD4-positive, alpha-beta memory T cell
30
heart left ventricle
30
spleen
25
MCF-7
23
adipose tissue
22
CD8-positive, alpha-beta memory T cell
22
foreskin keratinocyte
22
sigmoid colon
20
breast cancer cell
20
mononuclear cell
20
pigmented layer of retina
20
trophoblast cell
19
HFFc6
19
psoas muscle
18
foreskin fibroblast
18
pancreas
17
gastrocnemius medialis
17
heart right ventricle
17
ovary
17
regulatory T cell
16
CD14-positive monocyte
16
body of pancreas
16
chorionic villus
16
embryonic stem cell
16
endothelial cell of umbilical vein
16
muscle of trunk
16
thyroid gland
16
tibial nerve
16
transverse colon
16
upper lobe of left lung
15
H9
15
HepG2
15
natural killer cell
15
retinal pigment epithelial cell
15
testis
14
GM12878
14
T-helper 1 cell
14
cardiac muscle cell
14
endocrine pancreas
14
hepatocyte
14
mesenchymal stem cell
13
CD4-positive, alpha-beta T cell
13
Peyer's patch
13
T cell
13
T-helper 17 cell
13
T-helper 2 cell
13
bronchial epithelial cell
13
fibroblast of cardiac tissue
13
fibroblast of lung
13
keratinocyte
13
layer of hippocampus
13
mammary gland epithelial cell
13
neurosphere
13
osteoblast
13
skeletal muscle tissue
12
adipocyte
12
aorta
12
caudate nucleus
12
neuroblastoma cell
12
prostate gland
12
skeletal muscle myoblast
11
EndoC_BH1
11
coronary artery
11
fibroblast of dermis
11
left renal cortex interstitium
11
tibial artery
10
22Rv1
10
Rhabdomyosarcoma
10
breast epithelium
10
epithelial cell of prostate
10
esophagus squamous epithelium
10
gastric cancer cell
10
lymphocyte
10
mammary epithelial cell
10
right renal pelvis
10
temporal lobe
10
trophoblast
9
HEK293
9
SK-N-DZ
9
choroid plexus epithelial cell
9
diffuse intrinsic pontine glioma
9
kidney tubule cell
9
left renal pelvis
9
liposarcoma
9
neuronal stem cell
9
neutrophil
9
omental fat pad
9
parathyroid adenoma
9
right atrium auricular region
9
right renal cortex interstitium
9
substantia nigra
9
thoracic aorta
9
tongue
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
GM19240
8
IMR-90
8
NAMALWA cell
8
dermis blood vessel endothelial cell
8
endodermal cell
8
esophagus
8
esophagus muscularis mucosa
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
islet of Langerhans
8
limb
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
Ammon's horn
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CMK
7
Caco-2 cell
7
GM12875
7
GM19238
7
GM19239
7
GM23248
7
HAP-1
7
HL-60
7
HT-29
7
SK-N-MC
7
SK-N-SH
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
ascending aorta
7
cerebellum
7
chorion membrane
7
cingulate gyrus
7
colonic mucosa
7
dermis lymphatic vessel endothelial cell
7
duodenal mucosa
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
mature neutrophil
7
mesendoderm
7
skin fibroblast
6
Brodmann (1909) area 46
6
Chondroid Chordoma
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM12891
6
GM12892
6
GM18507
6
HCT116
6
HUES6
6
HUES8
6
HuH-7
6
KARPAS-422 cell
6
SJSA1
6
SW480
6
WI38
6
astrocyte
6
chondrocyte
Organ
4
epithelium
Life stage
1
unknown
Date released
3
February, 2021
1
May, 2022
Software used
4
macs
Lab
17
Bing Ren, UCSD
6
Kyle Gaulton, UCSD
4
AMP-T2D consortium
1
Katalin Susztak, Upenn
1
Stephen Parker, UMich
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR897TMQ
released
Annotation file set
: Accessible chromatin from snATAC-seq of endothelial cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR296FOQ
released
Annotation file set
: Histone modifications annotation for Cardiovascular Endothelial_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR406JQN
released
Annotation file set
: Binding sites annotation for Cardiovascular Primary_endothelial_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR388QAH
released
Annotation file set
: Binding sites annotation for Cardiovascular Endothelial_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP