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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
binding sites
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
19
primary cell
5
cell line
1
tissue
Biosample term
41
A549
17
MCF-7
16
K562
11
HepG2
11
breast cancer cell
9
EndoC_BH1
9
Rhabdomyosarcoma
9
gastric cancer cell
8
H9
8
HeLa-S3
8
SK-N-DZ
8
neuroblastoma cell
7
22Rv1
6
B-lymphoblastoid cell line
6
GM12878
6
HEK293
6
NAMALWA cell
6
SK-N-SH
6
WI38
6
diffuse intrinsic pontine glioma
6
endometrium adenocarcinoma
6
immortal human breast epithelial cell line cell
6
liposarcoma
6
squamous cell lung carcinoma
5
CMK
5
Chondroid Chordoma
5
GM06990
5
GM12864
5
GM12865
5
GM23248
5
HAP-1
5
HL-60
5
HT-29
5
IMR-90
5
KARPAS-422 cell
5
LHCN-M2
5
LNCaP clone FGC
5
MG63
5
MM.1S
5
OCI-LY7
5
PC-3
5
PC-9
5
RPMI8226
5
RWPE1
5
SK-N-MC
5
SW480
5
T47D
5
WERI-Rb-1
5
esophageal adenocarcinoma
5
hESC cell
5
melanoma cell
4
A172
4
ACHN
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
BE(2)-C
4
BJ cell
4
Caco-2 cell
4
Caki2
4
Daoy
4
GM04503
4
GM04504
4
GM10248
4
GM10266
4
GM12875
4
GM18507
4
GM19240
4
H1-hESC
4
H4
4
H7-hESC
4
HUES6
4
HuH-7
4
KBM-7
4
L1-S8
4
LNCAP
4
LoVo cell
4
M059J
4
NT2-D1 cell
4
OCI-LY1
4
RCC 7860
4
RPMI7951
4
Rh-4 cell
4
SJCRH30
4
SJSA1
4
SK-MEL-5
4
fibroblast of cardiac tissue
4
lymphoblastoid cell line
4
osteosarcoma
3
A673
3
ACC112
3
AG08396 cell
3
C4-2B
3
COLO205
3
DND-41
3
DOHH2
3
EH
3
EL
3
ELF-1
3
ELR
3
Ewing sarcoma
3
G401
3
GM03348
3
GM08714
3
GM12891
3
GM12892
3
GM19238
3
GM19239
3
GM23338
3
H54
3
HCT116
3
HK-2 cell
3
HS-27A
3
HS-5
3
HT1080
3
HUES48
3
HUES64
3
Jurkat
3
KMS-11
3
KOPT-K1
3
L1-S8R
3
Loucy
3
MCF 10A
3
NB4
3
NCI-H226 cell
3
NCI-H929
3
OCI-LY3
3
Panc1
3
RKO
3
RS4-11 cell
3
RWPE2
3
SU-DHL-6
3
U-266 cell
3
UCSF-4
3
VCaP cell
3
Z-138
3
acute myeloid leukemia
3
esophageal squamous cell carcinoma
3
glioblastoma cell
3
glioma cell
3
iPS DF 19.11
3
iPS DF 19.7
3
iPS DF 6.9
3
iPS-11a
3
iPS-15b
3
iPS-18a
3
iPS-18c
3
iPS-20b
3
lymphoblast
3
lymphocyte
3
renal cell carcinoma
3
urothelium cell line
2
786-O cell
2
8988T
2
A-673 cell
2
AG08395 cell
2
AG10803
2
AG20443
2
COLO829
2
CWRU1
2
D341 Med cell
2
DG-75 cell
2
ES-I3
2
ESC derived cell line
2
G-401 cell
2
GM12873
2
GM13976
2
GM13977
2
GM20000
2
HAC cell
2
HBMEC cell
2
HCT-116 cell
2
HEK293T
2
HPDE6-E6E7
2
HS-SY-2 cell
2
HTR-8/Svneo
2
HeLa cell
2
HuH-7.5
2
JVM-2 cell
2
Kasumi-1
2
MCF10A-Er-Src cell
2
MDA-MB-231 cell
2
MOLM-13 cell
2
Mantle cell lymphoma
2
Myoblasts
2
NAMALWA
2
NB-4 cell
2
NCCIT cell
2
NCI-H460 cell
2
NHBE cell
2
NHDF cell
2
NHEK
2
Normal Human Astrocytes
2
OCI-AML3
2
PA-TU-8988T cell
2
PANC-1 cell
2
REH cell
2
Rh-5 cell
Disease term
2
acute promyelocytic leukemia
Organ
5
blood
5
bodily fluid
Life stage
3
adult
Date released
2
February, 2021
2
September, 2022
1
June, 2020
Software used
2
macs
1
chromhmm
1
encode-ccres
1
r
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_type!
binding sites
Showing 5 of 5 results
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Download
FileSet
DSR592INO
released
Annotation file set
: Candidate regulatory elements for BSS00702 HL-60 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR291VRD
released
Annotation file set
: Chromatin states for BSS00702 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR321NFU
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HL-60
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR922OOJ
released
Annotation file set
: Histone modifications annotation for Blood HL-60 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR585SZU
released
Annotation file set
: Accessible chromatin annotation for Blood HL-60 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP