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Schema
Citing CMDGA
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Annotation type
3
accessible chromatin
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
1
Target gene links
Annotation type Category
3
snATAC-seq
Available data
3
bed bed3+
2
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
50
muscle of arm
44
muscle of leg
41
muscle of back
13
gastrocnemius medialis
12
muscle of trunk
12
psoas muscle
10
skeletal muscle tissue
9
skeletal muscle satellite cell
8
esophagus muscularis mucosa
7
stomach smooth muscle
6
LHCN-M2
6
gastroesophageal sphincter
5
skeletal muscle fiber
4
SJCRH30
4
myotube
4
skeletal muscle cell
3
A673
3
rectum smooth muscle tissue
3
type I muscle cell
3
type II muscle cell
2
cardiac muscle myoblast
2
forelimb muscle
2
respiratory system smooth muscle
2
somatic muscle myotube
1
hindlimb muscle
1
aortic smooth muscle cell
1
hindlimb muscle
1
rectal smooth muscle tissue
1
skeletal muscle
smooth muscle tissue
Organ
3
musculature of body
Life stage
1
unknown
Date released
1
February, 2024
1
May, 2022
1
November, 2021
Software used
3
macs
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
2
AMP
1
ENCODE
RFA
1
AMP
1
AMP2
1
ENCODE3
annotation_type!
gene expression
biosample_term_name!
smooth muscle tissue
Showing 3 of 3 results
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Download
FileSet
DSR704QRW
released
Annotation file set
: Accessible chromatin from snATAC-seq of type I muscle cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR470SUP
released
Annotation file set
: Accessible chromatin annotation of Type I Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR209HNE
released
Annotation file set
: Cell type chromatin broad peaks and bw of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP