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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
8
accessible chromatin
8
chromatin state
4
binding sites
4
candidate regulatory elements
3
histone modifications
Annotation Category
8
cis-regulatory elements
Annotation type Category
6
ATAC-seq
1
DNase-seq
1
snATAC-seq
Available data
7
bed bed3+
1
bigWig
File set status
8
released
Genome assembly (visualization)
7
hg19
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
primary cell
Biosample term
23
retina
19
pigmented layer of retina
18
monocyte
16
fibroblast
14
endothelial cell
13
excitatory neuron
13
macrophage
10
kidney
10
neural progenitor cell
10
pericyte cell
9
retinal pigment epithelial cell
8
B cell
8
EndoC_BH1
8
astrocyte
8
smooth muscle cell
7
T cell
7
islet of Langerhans
7
pancreatic beta cell
6
SGBS preadipocytes
6
embryonic stem cell
6
glutamatergic neuron
6
pancreatic alpha cell
5
CD8-positive, alpha-beta T cell
5
chondrocyte
5
erythroblast
5
heart
5
inhibitory neuron
5
osteoblast
5
pancreas
5
pancreatic acinar cell
5
pancreatic ductal cell
5
regulatory T cell
4
adipocyte
4
fibroblast of cardiac tissue
4
liver
4
memory B cell
4
natural killer cell
4
pancreatic delta cell
4
skeletal muscle satellite cell
4
type II pneumocyte
3
cardiac fibroblast
3
T-helper 1 cell
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
gabaergic neuron
3
glomerular visceral epithelial cell
3
heart left ventricle
3
hepatic stellate cell
3
hepatocyte
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
right atrium auricular region
3
skeletal muscle fiber
3
skin fibroblast
3
stomach
3
tibial artery
3
tibial nerve
3
type I pneumocyte
2
Ammon's horn
2
HepG2
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
adipose tissue
2
aortic endothelial cell
2
basal cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain
2
brain pericyte
2
capillary endothelial cell
2
cardiac muscle cell
2
caudate nucleus
2
central memory CD8-positive, alpha-beta T cell
2
choroid plexus epithelial cell
2
ciliated cell
2
club cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
endothelial cell of hepatic sinusoid
2
endothelial cell of umbilical vein
2
enteric neuron
2
enteric smooth muscle cell
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
frontal cortex
2
gamma-delta T cell
2
globus pallidus
2
glomerular endothelial cell
2
keratinocyte
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
mature natural killer cell
2
medulla oblongata
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesenchymal stem cell
2
mesothelial cell
2
midbrain
2
muscle of leg
2
naive regulatory T cell
2
neuron
2
occipital lobe
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
omental fat pad
2
pancreatic stellate cell
2
plasma cell
2
plasmacytoid dendritic cell
2
pons
2
putamen
2
renal cortical epithelial cell
2
renal pelvis
2
schwann cell
2
skeletal muscle myoblast
2
smooth muscle cell of the esophagus
2
spinal cord
2
spleen
2
subcutaneous adipose tissue
2
superior temporal gyrus
2
type I muscle cell
2
type II muscle cell
1
hindlimb muscle
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
1
GM19240
1
GM20000
1
GM23248
GP5d
1
Glioblastoma
1
H1-hESC
1
H4
1
H7-hESC
1
HAC cell
1
HAP-1
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HGF
1
HL-60
1
HT-29
1
HUES6
1
HUES8
1
HeLa cell
1
Hodgkin lymphoma cell line
1
HuH-7
1
HuTu-80 cell
Organ
2
connective tissue
Life stage
1
unknown
Date released
5
May, 2021
February, 2024
1
June, 2020
1
May, 2022
1
November, 2022
Software used
8
macs
Lab
7
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Project
8
AMP
RFA
7
AMP
1
AMP2
biosample_term_name!
GP5d
month_released!
February, 2024
Showing 8 of 8 results
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Download
FileSet
DSR455VRI
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Embryonic Stem Cell).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR995THT
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Late pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR305VKL
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Early pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR323EMN
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Gut tube cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838FNO
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Embyonic stem cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661PJZ
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Definitive endoderm cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP