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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
2
binding sites
1
histone modifications
Annotation Category
10
Gene expression levels
7
cis-regulatory elements
5
Genetic variant effects
Annotation type Category
3
ChIP-seq
3
snATAC-seq
ATAC-seq
Available data
7
bed bed3+
2
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
6
primary cell
1
tissue
Biosample term
89
monocyte
64
heart
63
stomach
53
brain
51
kidney
50
muscle of arm
49
lung
45
small intestine
44
muscle of leg
44
placenta
43
A549
43
adrenal gland
42
large intestine
41
muscle of back
40
common myeloid progenitor, CD34-positive
39
CD8-positive, alpha-beta T cell
39
left lung
34
right lung
34
thymus
32
hematopoietic multipotent progenitor cell
31
right kidney
30
renal cortex interstitium
30
renal pelvis
29
neural progenitor cell
27
left kidney
26
B cell
26
liver
26
spinal cord
23
CD4-positive, alpha-beta memory T cell
23
spleen
22
heart left ventricle
20
MCF-7
20
breast cancer cell
18
K562
18
foreskin keratinocyte
16
foreskin fibroblast
16
sigmoid colon
15
CD8-positive, alpha-beta memory T cell
15
trophoblast cell
14
endothelial cell of umbilical vein
13
HepG2
13
adipocyte
13
adipose tissue
13
gastrocnemius medialis
13
mononuclear cell
13
upper lobe of left lung
12
CD14-positive monocyte
12
hepatocyte
12
keratinocyte
12
neuroblastoma cell
12
pancreas
12
psoas muscle
12
regulatory T cell
12
retina
12
skeletal muscle myoblast
12
testis
12
thyroid gland
11
CD4-positive, alpha-beta T cell
11
bronchial epithelial cell
11
cardiac muscle cell
11
caudate nucleus
11
fibroblast of lung
11
heart right ventricle
11
mammary epithelial cell
11
mesenchymal stem cell
11
osteoblast
11
ovary
11
tibial nerve
11
transverse colon
10
Rhabdomyosarcoma
10
T cell
10
chorionic villus
10
gastric cancer cell
10
layer of hippocampus
10
mammary gland epithelial cell
10
muscle of trunk
10
natural killer cell
10
skeletal muscle tissue
10
temporal lobe
9
HeLa-S3
9
Peyer's patch
9
body of pancreas
9
diffuse intrinsic pontine glioma
9
endocrine pancreas
9
liposarcoma
9
neuronal stem cell
9
neurosphere
9
prostate gland
9
substantia nigra
8
22Rv1
8
GM12878
8
H9
8
HEK293
8
SK-N-DZ
8
choroid plexus epithelial cell
8
esophagus squamous epithelium
8
fibroblast of cardiac tissue
8
fibroblast of dermis
8
left cardiac atrium
8
left renal cortex interstitium
7
B-lymphoblastoid cell line
7
GM06990
7
GM12864
7
GM12865
7
H1-hESC
7
HL-60
7
IMR-90
7
T-helper 2 cell
7
aorta
7
breast epithelium
7
colonic mucosa
7
embryonic stem cell
7
endothelial cell
7
epithelial cell of prostate
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
fibroblast cell line
7
kidney tubule cell
7
left renal pelvis
7
mature neutrophil
7
right renal pelvis
7
tibial artery
7
tongue
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19240
6
GM23248
6
HAP-1
6
HT-29
6
KARPAS-422 cell
6
LHCN-M2
6
MG63
6
MM.1S
6
NAMALWA cell
6
SW480
6
T-helper 1 cell
6
T-helper 17 cell
6
angular gyrus
6
ascending aorta
6
cerebellum
6
cingulate gyrus
6
coronary artery
6
dermis blood vessel endothelial cell
6
duodenal mucosa
6
endodermal cell
6
fibroblast of villous mesenchyme
6
foreskin melanocyte
6
globus pallidus
6
hESC cell
6
hepatic stellate cell
6
lower leg skin
6
mesodermal cell
6
midbrain
6
neuroblastoma cell line
6
neutrophil
6
omental fat pad
6
right atrium auricular region
6
right renal cortex interstitium
6
trophoblast
5
Ammon's horn
5
CD14-positive, CD16-negative classical monocyte
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM19238
5
GM19239
5
HUES6
5
HuH-7
5
Jurkat
5
KBM-7
5
LNCAP
5
LNCaP clone FGC
5
LoVo cell
5
PC-9
5
SJSA1
5
SK-N-MC
5
T47D
5
WERI-Rb-1
5
acute myeloid leukemia
5
dermis lymphatic vessel endothelial cell
5
esophagus
5
fibroblast
5
fibroblast of breast
5
fibroblast of pulmonary artery
5
immortal human breast epithelial cell line cell
5
islet of Langerhans
Organ
7
epithelium
Life stage
1
adult
1
unknown
Date released
3
February, 2021
2
February, 2024
2
May, 2022
Software used
7
macs
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
10
ENCODE
7
AMP
1
T1D
RFA
5
AMP
2
AMP2
annotation_type_category!
ATAC-seq
Showing 7 of 7 results
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Download
FileSet
DSR369PUU
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Endothelial
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR897TMQ
released
Annotation file set
: Accessible chromatin from snATAC-seq of endothelial cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR426RPD
released
Annotation file set
: Accessible chromatin annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR296FOQ
released
Annotation file set
: Histone modifications annotation for Cardiovascular Endothelial_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR406JQN
released
Annotation file set
: Binding sites annotation for Cardiovascular Primary_endothelial_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR388QAH
released
Annotation file set
: Binding sites annotation for Cardiovascular Endothelial_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP