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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
Annotation Category
1
cis-regulatory elements
Available data
1
bed bed3+
1
bigWig
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
20
primary cell
1
tissue
Biosample term
64
heart
63
stomach
53
brain
51
kidney
50
muscle of arm
49
lung
45
small intestine
44
muscle of leg
44
placenta
43
adrenal gland
42
large intestine
41
muscle of back
39
left lung
34
right lung
34
thymus
31
right kidney
30
renal cortex interstitium
30
renal pelvis
27
left kidney
26
liver
23
spleen
22
heart left ventricle
22
spinal cord
16
sigmoid colon
14
adipose tissue
14
pancreas
13
gastrocnemius medialis
13
ovary
13
retina
13
testis
13
thyroid gland
13
transverse colon
13
upper lobe of left lung
12
body of pancreas
12
caudate nucleus
12
chorionic villus
12
heart right ventricle
12
layer of hippocampus
12
muscle of trunk
12
psoas muscle
12
tibial nerve
11
Peyer's patch
11
endocrine pancreas
11
prostate gland
11
temporal lobe
10
skeletal muscle tissue
9
esophagus squamous epithelium
9
left cardiac atrium
9
left renal cortex interstitium
9
left renal pelvis
9
right renal pelvis
9
substantia nigra
8
angular gyrus
8
aorta
8
ascending aorta
8
breast epithelium
8
colonic mucosa
8
esophagus muscularis mucosa
8
lower leg skin
8
omental fat pad
8
right renal cortex interstitium
8
tibial artery
8
trophoblast
7
cerebellum
7
chorion membrane
7
cingulate gyrus
7
coronary artery
7
duodenal mucosa
7
eye
7
islet of Langerhans
7
mucosa of rectum
7
parathyroid adenoma
7
right atrium auricular region
7
stomach smooth muscle
7
thoracic aorta
7
tongue
6
esophagus
6
frontal cortex
6
gastroesophageal sphincter
6
globus pallidus
6
limb
6
midbrain
6
muscle layer of colon
6
muscle layer of duodenum
6
putamen
6
subcutaneous abdominal adipose tissue
6
urinary bladder
6
vagina
5
Ammon's horn
5
occipital lobe
5
right cardiac atrium
5
superior temporal gyrus
5
umbilical cord
5
uterus
4
Brodmann (1909) area 46
4
cerebellar cortex
4
germinal matrix
4
medulla oblongata
4
middle frontal gyrus
4
pons
3
amnion
3
cortex of kidney
3
embryonic facial prominence
3
femur
3
inferior parietal cortex
3
mucosa of stomach
3
prefrontal cortex
3
rectum smooth muscle tissue
3
right lobe of liver
3
subcutaneous adipose tissue
3
suprapubic skin
2
arm bone
2
breast carcinoma
2
chorion
2
endometrium cancer
2
first pancreatic bud
2
forelimb muscle
2
germinal center
2
kidney epithelium
2
leg bone
2
mammary gland
2
middle frontal area 46
2
pancreatic ductal cell
2
pancreatic stellate cell
2
placental basal plate
2
respiratory system smooth muscle
2
skin of body
2
skin of forearm
2
skin of prepuce of penis
1
hindlimb muscle
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Schwann cell
1
amygdala
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
caput epididymis
1
cardiogenic mesoderm
1
cartilage tissue
1
circle of Willis
1
claustrum of brain
1
colon
1
corneal epithelium
1
crypt of Lieberkuhn
1
dentate nucleus
1
dorsal lateral geniculate nucleus
1
dura mater
1
endometrium
1
endothelial cell
1
entorhinal cortex
1
epididymis
1
fallopian tube
1
fetal heart
1
frontal pole
1
glomerular epithelium
1
gyrus rectus
1
hindlimb muscle
1
hypothalamus
1
intestinal epithelium
1
left leg bone
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulloblastoma
1
mid-frontal lobe
1
morula
1
myelencephalon
1
nucleus accumbens
1
nucleus of ventral thalamus
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
pancreatic adenocarcinoma
1
pancreatic carcinoma
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary gland
1
pontine tegmentum
1
precentral gyrus
1
precuneus cortex
1
proximal epiphysis of femur
1
pulvinar nucleus
1
raphe nuclei
1
rectal smooth muscle tissue
1
red nucleus
1
renal connecting tubule
1
renal cortex tubule
1
right arm bone
1
septal nuclear complex
1
skeletal muscle
1
smooth muscle tissue
1
subiculum
1
superior parietal cortex
1
supramarginal gyrus
1
temporal pole
1
thalamic complex
1
tissue-resident macrophage
1
type B pancreatic cell
Organ
1
epithelium
Date released
1
February, 2024
Software used
1
macs
Lab
1
Kyle Gaulton, UCSD
Project
1
AMP
RFA
1
AMP
annotation_type_category!
ATAC-seq
Showing 1 of 1 results
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Download
FileSet
DSR369PUU
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Endothelial
Lab:
Kyle Gaulton, UCSD
Project:
AMP