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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
candidate regulatory elements
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
8
cis-regulatory elements
2
Genetic variant effects
2
Target gene links
1
Gene expression levels
Annotation type Category
5
ChIP-seq
3
DNase-seq
2
snATAC-seq
Available data
7
bed bed3+
1
bed bed9
1
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
6
in vitro differentiated cells
2
primary cell
Biosample term
61
heart
53
brain
50
muscle of arm
47
stomach
45
lung
44
kidney
44
muscle of leg
42
large intestine
41
muscle of back
39
left lung
39
small intestine
34
right lung
34
thymus
31
right kidney
30
renal cortex interstitium
30
renal pelvis
29
neural progenitor cell
27
left kidney
26
spinal cord
25
adrenal gland
23
CD8-positive, alpha-beta T cell
20
breast cancer cell
18
foreskin keratinocyte
17
CD4-positive, alpha-beta memory T cell
17
fibroblast
16
endothelial cell
16
foreskin fibroblast
15
keratinocyte
15
trophoblast cell
14
endothelial cell of umbilical vein
13
B cell
13
HepG2
13
cardiac muscle cell
13
macrophage
12
adipocyte
12
heart left ventricle
12
hepatocyte
12
liver
12
neuroblastoma cell
12
pericyte cell
12
retina
11
bronchial epithelial cell
11
chorionic villus
11
excitatory neuron
11
osteoblast
10
Rhabdomyosarcoma
10
astrocyte
10
gastric cancer cell
10
muscle of trunk
10
smooth muscle cell
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
neuronal stem cell
9
neurosphere
8
22Rv1
8
H9
8
HEK293
8
SK-N-DZ
8
T cell
8
T-helper 17 cell
8
choroid plexus epithelial cell
8
common myeloid progenitor, CD34-positive
8
fibroblast of cardiac tissue
8
left cardiac atrium
8
left renal cortex interstitium
8
skeletal muscle myoblast
7
B-lymphoblastoid cell line
7
GM06990
7
GM12864
7
GM12865
7
H1-hESC
7
IMR-90
7
NAMALWA cell
7
SK-N-MC
7
SK-N-SH
7
T-cell acute lymphoblastic leukemia
7
acute myeloid leukemia
7
embryonic stem cell
7
epithelial cell of prostate
7
erythroblast
7
esophageal adenocarcinoma
7
fibroblast cell line
7
fibroblast of lung
7
heart right ventricle
7
left renal pelvis
7
mammary epithelial cell
7
pancreatic ductal cell
7
retinal pigment epithelial cell
7
right renal pelvis
7
spleen
7
tongue
6
AG04449 cell
6
AG04450 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Chondroid Chordoma
6
MCF-7
6
MG63
6
NT2-D1 cell
6
PC-9
6
Rh-4 cell
6
WERI-Rb-1
6
WI38
6
endodermal cell
6
foreskin melanocyte
6
hESC cell
6
islet of Langerhans
6
mammary gland epithelial cell
6
mesodermal cell
6
neuroblastoma cell line
6
neutrophil
6
regulatory T cell
6
right renal cortex interstitium
6
skin fibroblast
6
trophoblast
5
CD8-positive, alpha-beta memory T cell
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM12891
5
GM12892
5
HUES6
5
Jurkat
5
K562
5
RS4-11 cell
5
Th1 cell
5
chorion membrane
5
dermis lymphatic vessel endothelial cell
5
fibroblast of pulmonary artery
5
hematopoietic multipotent progenitor cell
5
limb
5
lymphoblastoid cell line
5
mesenchymal stem cell
5
osteosarcoma
5
pancreas
5
prostate cancer cell line
5
pulmonary artery endothelial cell
4
A549
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
B-lymphocyte
4
CD4-positive, alpha-beta T cell
4
COLO205
4
Caco-2 cell
4
GM12873
4
GM12875
4
GM12878
4
GM18507
4
GM19240
4
H7-hESC
4
HAC cell
4
HBMEC cell
4
HCT-116 cell
4
HK-2 cell
4
HL-60
4
HS-SY-2 cell
4
HUES64
4
KARPAS-422 cell
4
L1-S8
4
Mantle cell lymphoma
4
NHEK
4
Normal Human Astrocytes
4
PANC-1 cell
4
RKO
4
SAEC
4
SJCRH30
4
SK-N-SH_RA
4
T-47D cell
4
T-helper 1 cell
4
U-266 cell
4
U2OS
4
WI-38 cell
4
acute myeloid leukemia cell
4
colon epithelial cell
4
diffuse large B-cell lymphoma
4
erythroid cell
4
esophageal squamous cell carcinoma
4
fibroblast of dermis
4
fibroblast of mammary gland
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
kidney epithelial cell
4
mesendoderm
4
monocyte
4
mononuclear cell
4
non-pigmented ciliary epithelial cell
4
pancreatic acinar cell
4
skeletal muscle satellite cell
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
testis
4
tracheal epithelial cell
4
triple-negative breast cancer
4
umbilical cord
3
786-O cell
3
A673
3
CD14-positive monocyte
Organ
8
connective tissue
Life stage
adult
3
embryonic
1
unknown
Date released
3
February, 2021
2
September, 2022
1
February, 2024
1
June, 2020
1
May, 2022
Software used
5
macs
1
chromhmm
1
encode-ccres
1
r
Lab
7
AMP-T2D consortium
1
Stephen Parker, UMich
Project
8
AMP
RFA
7
AMP
1
AMP2
annotation_type_category!
ATAC-seq
organ_slims!
placenta
relevant_life_stage!
adult
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR902OPF
released
Annotation file set
: Candidate regulatory elements for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR073XBJ
released
Annotation file set
: Chromatin states for BSS01261 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR718ELE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337GCY
released
Annotation file set
: Histone modifications annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR959CJP
released
Annotation file set
: Binding sites annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP