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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
87
ChIP-seq
15
ATAC-seq
2
DNase-seq
1
snATAC-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
43
stomach
41
heart
34
muscle of arm
33
lung
32
kidney
31
brain
30
small intestine
29
adrenal gland
29
muscle of leg
28
large intestine
28
muscle of back
27
common myeloid progenitor, CD34-positive
27
placenta
26
left lung
23
right lung
22
A549
21
renal cortex interstitium
21
renal pelvis
21
right kidney
21
thymus
20
B cell
20
hematopoietic multipotent progenitor cell
18
left kidney
16
fibroblast
16
spinal cord
16
spleen
14
CD4-positive, alpha-beta memory T cell
14
endothelial cell
14
liver
13
heart left ventricle
13
macrophage
12
excitatory neuron
12
foreskin keratinocyte
11
T cell
11
pericyte cell
11
sigmoid colon
11
smooth muscle cell
10
CD8-positive, alpha-beta T cell
10
MCF-7
10
trophoblast cell
9
CD4-positive, alpha-beta T cell
9
astrocyte
9
gastrocnemius medialis
9
natural killer cell
9
ovary
9
pancreas
9
thyroid gland
9
transverse colon
8
CD14-positive monocyte
8
CD8-positive, alpha-beta memory T cell
8
K562
8
Peyer's patch
8
body of pancreas
8
chorionic villus
8
endothelial cell of umbilical vein
8
foreskin fibroblast
8
muscle of trunk
8
psoas muscle
8
regulatory T cell
8
retina
8
testis
8
tibial nerve
8
upper lobe of left lung
7
H9
7
T-helper 1 cell
7
adipocyte
7
adipose tissue
7
cardiac muscle cell
7
caudate nucleus
7
endocrine pancreas
7
esophagus squamous epithelium
7
fibroblast of cardiac tissue
7
heart right ventricle
7
left renal cortex interstitium
7
left renal pelvis
7
mesenchymal stem cell
7
mononuclear cell
7
neurosphere
7
right renal pelvis
7
skeletal muscle satellite cell
6
breast epithelium
6
dermis blood vessel endothelial cell
6
esophagus muscularis mucosa
6
fibroblast of lung
6
hepatocyte
6
layer of hippocampus
6
lower leg skin
6
omental fat pad
6
pancreatic alpha cell
6
pancreatic beta cell
6
right renal cortex interstitium
6
skeletal muscle myoblast
6
skeletal muscle tissue
5
HeLa-S3
5
SK-N-DZ
5
T-helper 17 cell
5
T-helper 2 cell
5
WI38
5
ascending aorta
5
bronchial epithelial cell
5
epithelial cell of prostate
5
erythroblast
5
eye
5
foreskin melanocyte
5
gastroesophageal sphincter
5
inhibitory neuron
5
keratinocyte
5
kidney tubule cell
5
mammary gland epithelial cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
neural progenitor cell
5
osteoblast
5
pancreatic acinar cell
5
pancreatic delta cell
5
pancreatic ductal cell
5
parathyroid adenoma
5
prostate gland
5
retinal pigment epithelial cell
5
right atrium auricular region
5
skeletal muscle fiber
5
skin fibroblast
5
subcutaneous abdominal adipose tissue
5
substantia nigra
5
temporal lobe
5
tibial artery
5
tongue
5
trophoblast
4
22Rv1
4
Ammon's horn
4
HEK293
4
SK-N-SH
4
T-cell
4
angular gyrus
4
aorta
4
cerebellum
4
chorion membrane
4
choroid plexus epithelial cell
4
cingulate gyrus
4
colon epithelial cell
4
colonic mucosa
4
coronary artery
4
duodenal mucosa
4
endodermal cell
4
esophagus
4
fibroblast of breast
4
fibroblast of dermis
4
frontal cortex
4
globus pallidus
4
glomerular endothelial cell
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
limb
4
mammary epithelial cell
4
mesodermal cell
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
neural cell
4
neutrophil
4
peripheral blood mononuclear cell
4
putamen
4
renal cortical epithelial cell
4
stomach smooth muscle
4
thoracic aorta
4
type II pneumocyte
4
urinary bladder
4
uterus
4
vagina
3
cardiac fibroblast
3
A172
3
ACHN
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caki2
3
Daoy
3
GM04503
3
GM04504
3
GM06990
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12878
3
GM23248
3
H4
3
HAP-1
3
HL-60
3
HT-29
3
HUES6
3
HepG2
3
IMR-90
3
KBM-7
3
L1-S8
3
LHCN-M2
3
LNCAP
3
LNCaP clone FGC
3
M059J
3
MCF 10A
3
MG63
Date released
2
June, 2020
1
January, 2021
Software used
3
macs
Lab
2
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
2
AMP
1
T1D
RFA
2
AMP
1
T1D
month_released!
August, 2018
Showing 3 of 3 results
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Download
FileSet
DSR505TCS
released
Annotation file set
: Accessible chromatin annotation for Blood Monocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR669PBL
released
Annotation file set
: Accessible chromatin annotation for Blood Monocytes-CD14+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR234HXR
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D