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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
1
snATAC-seq
Available data
1
bed bed3+
1
bigWig
File set status
1
released
Genome assembly (visualization)
42
hg19
1
GRCh38
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
monocyte
27
neural progenitor cell
25
kidney
22
heart
19
brain
19
fibroblast
18
A549
18
stomach
17
muscle of arm
16
muscle of leg
15
endothelial cell
15
lung
14
B cell
14
adrenal gland
14
placenta
14
small intestine
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
hepatocyte
13
large intestine
13
left lung
13
macrophage
13
muscle of back
12
endothelial cell of hepatic sinusoid
12
pericyte cell
11
right kidney
11
right lung
10
heart left ventricle
10
hematopoietic multipotent progenitor cell
10
renal cortex interstitium
10
renal pelvis
10
smooth muscle cell
10
thymus
9
CD4-positive, alpha-beta memory T cell
9
T cell
9
astrocyte
9
left kidney
9
liver
7
CD8-positive, alpha-beta memory T cell
7
left cardiac atrium
7
spinal cord
6
K562
6
adipose tissue
6
coronary artery
6
mononuclear cell
6
natural killer cell
6
spleen
6
tibial nerve
5
HepG2
5
MCF-7
5
adipocyte
5
endothelial cell of lymphatic vessel
5
endothelial cell of umbilical vein
5
erythroblast
5
fibroblast of cardiac tissue
5
heart right ventricle
5
inhibitory neuron
5
islet of Langerhans
5
pancreas
5
pancreatic acinar cell
5
skeletal muscle satellite cell
5
tibial artery
5
trophoblast cell
4
CD14-positive monocyte
4
angular gyrus
4
aorta
4
ascending aorta
4
body of pancreas
4
caudate nucleus
4
chorionic villus
4
colon epithelial cell
4
endocardial cell
4
endocrine pancreas
4
foreskin keratinocyte
4
gastrocnemius medialis
4
hepatic stellate cell
4
keratinocyte
4
mammary gland epithelial cell
4
mast cell
4
muscle of trunk
4
omental fat pad
4
osteoblast
4
ovary
4
pancreatic beta cell
4
pancreatic ductal cell
4
retina
4
right atrium auricular region
4
sigmoid colon
4
temporal lobe
4
thoracic aorta
4
thyroid gland
4
transverse colon
3
cardiac fibroblast
3
HeLa-S3
3
Peyer's patch
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
cardiac muscle cell
3
cerebellum
3
chorion membrane
3
cortical cell of adrenal gland
3
endometrium adenocarcinoma
3
enterocyte
3
fibroblast of dermis
3
fibroblast of lung
3
frontal cortex
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
luminal epithelial cell of mammary gland
3
mesenchymal stem cell
3
naive T cell
3
neurosphere
3
pancreatic alpha cell
3
psoas muscle
3
regulatory T cell
3
retinal pigment epithelial cell
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle fiber
3
skeletal muscle tissue
3
skin fibroblast
3
testis
3
type II pneumocyte
3
upper lobe of left lung
2
22Rv1
2
Ammon's horn
2
Brodmann (1909) area 46
2
LNCaP clone FGC
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T47D
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
blood vessel smooth muscle cell
2
brain microvascular endothelial cell
2
breast epithelium
2
bronchial epithelial cell
2
cerebellar cortex
2
cholangiocyte
2
choroid plexus epithelial cell
2
cingulate gyrus
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fetal cardiomyocyte
2
fibroblast of breast
2
foreskin fibroblast
2
gabaergic neuron
2
germinal matrix
2
globus pallidus
2
glomerular endothelial cell
2
glutamatergic neuron
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
limb
2
lower leg skin
2
medulla oblongata
2
mesangial cell
2
mesothelial cell
2
midbrain
2
middle frontal gyrus
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neuron
2
neuronal stem cell
2
neutrophil
2
occipital lobe
2
oligodendrocyte precursor cell
2
pancreatic stellate cell
2
parathyroid adenoma
2
pons
2
prostate gland
2
putamen
2
regular ventricular cardiac myocyte
2
renal cortical epithelial cell
2
schwann cell
2
skeletal muscle cell
2
skeletal muscle myoblast
2
smooth muscle cell of the brain vasculature
2
smooth muscle cell of the esophagus
2
stomach smooth muscle
Date released
1
November, 2021
Software used
1
macs
Lab
1
Bing Ren, UCSD
Project
1
ENCODE
RFA
1
ENCODE3
biosample_term_name!
monocyte
relevant_life_stage!
child
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR552LZW
released
Annotation file set
: Accessible chromatin annotation of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE