Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
Annotation Category
2
Gene expression levels
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
1
snATAC-seq
Available data
1
bed bed3+
1
bigBed narrowPeak
1
bigWig
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
104
monocyte
41
CD8-positive, alpha-beta T cell
40
common myeloid progenitor, CD34-positive
28
B cell
23
CD4-positive, alpha-beta memory T cell
17
endothelial cell
17
fibroblast
15
CD8-positive, alpha-beta memory T cell
15
endothelial cell of umbilical vein
15
foreskin keratinocyte
15
hepatocyte
14
T cell
14
foreskin fibroblast
14
mononuclear cell
14
regulatory T cell
13
osteoblast
13
trophoblast cell
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
T-helper 1 cell
12
astrocyte
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
fibroblast of lung
12
mammary epithelial cell
12
natural killer cell
12
pericyte cell
12
skeletal muscle myoblast
11
keratinocyte
11
macrophage
10
T-helper 17 cell
10
T-helper 2 cell
10
bronchial epithelial cell
10
neurosphere
9
erythroblast
9
mature neutrophil
9
retinal pigment epithelial cell
9
skeletal muscle satellite cell
9
smooth muscle cell
8
dermis blood vessel endothelial cell
8
fibroblast of cardiac tissue
8
fibroblast of dermis
8
mammary gland epithelial cell
8
pancreatic ductal cell
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
kidney tubule cell
6
CD1c-positive myeloid dendritic cell
6
epithelial cell of prostate
6
fibroblast of breast
6
glutamatergic neuron
6
hepatic stellate cell
6
myoepithelial cell of mammary gland
6
naive T cell
6
neutrophil
6
pancreatic beta cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
skin fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
choroid plexus epithelial cell
5
epithelial cell of proximal tubule
5
foreskin melanocyte
5
glomerular endothelial cell
5
glomerular visceral epithelial cell
5
inhibitory neuron
5
kidney glomerular epithelial cell
5
pancreatic acinar cell
5
pancreatic alpha cell
5
renal cortical epithelial cell
5
skeletal muscle fiber
5
tracheal epithelial cell
4
T-cell
4
acute myeloid leukemia cell
4
alternatively activated macrophage
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
cardiac muscle cell
4
dermis lymphatic vessel endothelial cell
4
fibroblast of peridontal ligament
4
iris pigment epithelial cell
4
kidney epithelial cell
4
luminal epithelial cell of mammary gland
4
lung microvascular endothelial cell
4
mesenchymal stem cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
non-pigmented ciliary epithelial cell
4
plasma cell
4
preadipocyte
4
renal epithelial cell
4
skeletal muscle cell
4
smooth muscle cell of the brain vasculature
4
type II pneumocyte
3
cardiac fibroblast
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
astrocyte of the spinal cord
3
bone marrow cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
epithelial cell of esophagus
3
erythroid cell
3
fibroblast of gingiva
3
fibroblast of the aortic adventitia
3
fibroblast of the conjunctiva
3
gabaergic neuron
3
inflammatory macrophage
3
kidney capillary endothelial cell
3
mast cell
3
memory B cell
3
mononuclear cell of bone marrow
3
myotube
3
neoplastic cell
3
pancreatic delta cell
3
peripheral blood stem cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
stromal cell of bone marrow
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
T follicular helper cell
2
Th2 cell
adipocyte
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
basal cell
2
blood vessel smooth muscle cell
2
brain pericyte
2
capillary endothelial cell
2
cardiac muscle myoblast
2
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
2
ciliated cell
2
club cell
2
columnar chondrocyte
2
dermis microvascular lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
epidermal melanocyte
2
epithelial cell of amnion
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
gamma-delta T cell
2
glial cell
2
head and neck squamous cell carcinoma
2
leukemic stem cell
2
leukocyte
2
mammary stem cell
2
mantle cell lymphoma cell
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
meso-epithelial cell
2
mesothelial cell
2
myofibroblast cell
2
naive B cell
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
neuron
2
neuronal stem cell
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
peripheral blood-derived erythroblast
2
primordial germ cell
2
prostate gland cancer cell
2
regular cardiac myocyte
2
renal proximal tubule cell
2
schwann cell
2
small cell ovarian carcinoma cell
2
smooth muscle cell of the esophagus
2
somatic muscle myotube
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
Glioblastoma
1
Stromal Predominant Kidney Wilms Tumor
Organ
1
epithelium
1
pancreas
Life stage
1
adult
Date released
1
February, 2024
Software used
1
macs
Lab
1
Kyle Gaulton, UCSD
Project
1
AMP
T1D
RFA
1
AMP
award.project!
T1D
biosample_term_name!
adipocyte
Showing 1 of 1 results
table-tab-icon
matrix-icon
Download
FileSet
DSR614CXC
released
Annotation file set
: pancreatic gamma cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP