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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
chromatin state
1
accessible chromatin
1
candidate regulatory elements
1
histone modifications
Annotation Category
39
Target gene links
8
Gene expression levels
7
cis-regulatory elements
Annotation type Category
6
ChIP-seq
2
DNase-seq
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
tissue
6
cell line
1
stem cell
Biosample term
105
monocyte
43
A549
43
CD8-positive, alpha-beta T cell
40
common myeloid progenitor, CD34-positive
39
neural progenitor cell
35
B cell
32
hematopoietic multipotent progenitor cell
23
CD4-positive, alpha-beta memory T cell
23
fibroblast
21
endothelial cell
20
MCF-7
20
adipocyte
20
breast cancer cell
19
hepatocyte
18
K562
18
foreskin keratinocyte
18
macrophage
17
natural killer cell
16
T cell
16
embryonic stem cell
16
foreskin fibroblast
15
CD8-positive, alpha-beta memory T cell
15
keratinocyte
15
retinal pigment epithelial cell
15
trophoblast cell
14
HepG2
14
endothelial cell of umbilical vein
14
pericyte cell
14
regulatory T cell
13
cardiac muscle cell
13
mononuclear cell
13
smooth muscle cell
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
excitatory neuron
12
neuroblastoma cell
12
osteoblast
12
skeletal muscle myoblast
11
T-helper 1 cell
11
bronchial epithelial cell
11
endothelial cell of hepatic sinusoid
11
fibroblast of cardiac tissue
11
fibroblast of lung
11
mammary epithelial cell
11
mesenchymal stem cell
11
neuronal stem cell
10
EndoC_BH1
10
Rhabdomyosarcoma
10
T-helper 17 cell
10
T-helper 2 cell
10
astrocyte
10
gastric cancer cell
10
mammary gland epithelial cell
9
HeLa-S3
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
neurosphere
9
pancreatic ductal cell
8
22Rv1
8
GM12878
8
H9
8
HEK293
8
SK-N-DZ
8
choroid plexus epithelial cell
8
fibroblast of dermis
8
pancreatic beta cell
8
skeletal muscle satellite cell
7
B-lymphoblastoid cell line
7
GM06990
7
GM12864
7
GM12865
7
H1-hESC
7
HL-60
7
IMR-90
7
NAMALWA cell
7
SK-N-MC
7
SK-N-SH
7
T-cell acute lymphoblastic leukemia
7
epithelial cell of prostate
7
erythroblast
7
esophageal adenocarcinoma
7
fibroblast cell line
7
hepatic stellate cell
7
kidney tubule cell
7
mature neutrophil
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19240
6
GM23248
6
HAP-1
6
HT-29
6
KARPAS-422 cell
6
LHCN-M2
6
MG63
6
MM.1S
6
NT2-D1 cell
6
OCI-LY7
6
PC-3
6
PC-9
6
RPMI8226
6
RWPE1
6
Rh-4 cell
6
SGBS preadipocytes
6
SW480
6
WERI-Rb-1
6
acute myeloid leukemia
6
chondrocyte
6
dermis blood vessel endothelial cell
6
endodermal cell
6
fibroblast of villous mesenchyme
6
foreskin melanocyte
6
hESC cell
6
mast cell
6
mesodermal cell
6
neuroblastoma cell line
6
neutrophil
6
skin fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM19238
5
GM19239
5
HUES6
5
HuH-7
5
Jurkat
5
KBM-7
5
LNCAP
5
LNCaP clone FGC
5
LoVo cell
5
OCI-LY1
5
RS4-11 cell
5
SJSA1
5
T47D
5
WI38
5
dermis lymphatic vessel endothelial cell
5
endothelial cell of lymphatic vessel
5
fibroblast of breast
5
fibroblast of pulmonary artery
glomerular visceral epithelial cell
5
immortal human breast epithelial cell line cell
5
lymphoblastoid cell line
5
myoepithelial cell of mammary gland
5
osteosarcoma
5
pancreatic acinar cell
5
prostate cancer cell line
5
pulmonary artery endothelial cell
4
A172
4
ACHN
4
B-lymphocyte
4
COLO205
4
Caki2
4
GM04503
4
GM04504
4
GM12873
4
GM18507
4
H4
4
H7-hESC
4
HAC cell
4
HBMEC cell
4
HCT-116 cell
4
HK-2 cell
4
HS-SY-2 cell
4
HUES64
4
Ishikawa
4
L1-S8
4
M059J
4
Mantle cell lymphoma
4
NB4
4
NHEK
4
Normal Human Astrocytes
4
OCI-LY3
4
PANC-1 cell
4
RCC 7860
4
RKO
4
RPMI7951
4
SK-MEL-5
4
SK-N-SH_RA
4
T-47D cell
4
Th1 cell
4
U2OS
4
acute myeloid leukemia cell
4
aortic endothelial cell
4
colon epithelial cell
4
diffuse large B-cell lymphoma
4
endometrium adenocarcinoma
Organ
7
embryo
Life stage
3
embryonic
Date released
2
February, 2021
2
September, 2022
1
August, 2017
1
June, 2020
1
October, 2022
Software used
3
chromhmm
3
macs
1
r
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
biosample_term_name!
glomerular visceral epithelial cell
biosample_type!
tissue
Showing 7 of 7 results
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Download
FileSet
DSR876GWY
released
Annotation file set
: Binding sites annotation for H1-hESC (H1-hESC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR416QNM
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR165RXW
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP