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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
binding sites
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
2
DNase-seq
1
ChIP-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
38
A549
15
K562
12
MCF-7
10
HepG2
8
EndoC_BH1
7
HeLa-S3
6
endometrium adenocarcinoma
6
immortal human breast epithelial cell line cell
5
GM12878
5
NAMALWA cell
5
SK-N-DZ
5
SK-N-SH
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
BE(2)-C
4
BJ cell
4
Caco-2 cell
4
GM06990
4
GM12864
4
GM12865
4
GM19240
4
H1-hESC
4
HEK293
4
HL-60
4
IMR-90
4
KARPAS-422 cell
4
LNCaP clone FGC
4
NT2-D1 cell
4
SK-N-MC
4
T47D
4
WERI-Rb-1
3
A172
3
ACHN
3
AG08396 cell
3
CMK
3
Caki2
3
Daoy
3
GM03348
3
GM04503
3
GM04504
3
GM08714
3
GM10248
3
GM10266
3
GM12875
3
GM12891
3
GM12892
3
GM18507
3
GM19238
3
GM19239
3
GM23248
3
H4
3
H7-hESC
3
HAP-1
3
HT-29
3
HUES6
3
HuH-7
3
KBM-7
3
L1-S8
3
L1-S8R
3
LHCN-M2
3
LoVo cell
3
M059J
3
MG63
3
MM.1S
3
NB4
3
NCI-H226 cell
3
OCI-LY7
3
PC-3
3
PC-9
3
RCC 7860
3
RPMI7951
3
RPMI8226
3
RWPE1
3
SJCRH30
3
SJSA1
3
SW480
2
8988T
2
A673
2
ACC112
2
AG08395 cell
2
AG20443
2
C4-2B
2
COLO829
2
CWRU1
2
DG-75 cell
2
DND-41
2
DOHH2
2
ECC-1
2
EH
2
EL
2
ELF-1
2
ELR
2
ES-I3
2
ESC derived cell line
2
G401
2
GM23338
2
H54
2
H9
2
HAC cell
2
HBMEC cell
2
HCT-116 cell
2
HCT116
2
HEK293T
2
HK-2 cell
2
HPDE6-E6E7
2
HS-27A
2
HS-5
2
HT1080
2
HTR-8/Svneo
2
HUES48
2
HUES64
2
HuH-7.5
2
KMS-11
2
KOPT-K1
2
Loucy
2
MCF10A-Er-Src cell
2
NCI-H460 cell
2
NCI-H929
2
NHEK
2
Normal Human Astrocytes
2
OCI-LY1
2
OCI-LY3
2
PANC-1 cell
2
Panc1
2
RWPE2
2
Rh-4 cell
2
SAEC
2
SK-MEL-5
2
SK-N-SH_RA
2
SU-DHL-6
2
SUDHL5
2
T-47D cell
2
U-266 cell
2
U-87 MG
2
U2OS
2
UCSF-4
2
VCaP cell
2
WI-38 cell
2
WI38
2
Z-138
2
colon carcinoma
2
colon epithelial cell
2
esophageal epithelial cell
2
fibroblast of cardiac tissue
2
foreskin fibroblast
2
iPS DF 19.11
2
iPS DF 19.7
2
iPS DF 4.7 Cell Line
2
iPS DF 6.9
2
iPS-11a
2
iPS-15b
2
iPS-18a
2
iPS-18c
2
iPS-20b
2
iPS-NIHi11
2
iPS-NIHi7
2
lymphocyte
2
medulloblastoma
2
renal cell carcinoma
2
spinal cord
2
urothelium cell line
1
786-O cell
1
A-673 cell
1
BL-2 cell
1
COLO-829 cell
1
COLO205
1
D341 Med cell
1
DND-41 cell
1
G-401 cell
1
GM10847
1
GM12801
1
GM12872
1
GM12873
1
GM12874
1
GM13976
1
GM13977
1
GM15510
1
GM18505
1
GM18526
1
GM18951
1
GM19099
1
GM19193
1
GM20000
1
GP5d
1
HEK293-T-REx cell
1
HFF-Myc
1
HGF
1
HGPS cell
1
HUES8
1
HeLa cell
1
Hodgkin lymphoma cell line
1
HuTu-80 cell
1
JVM-2 cell
1
Jurkat
1
Kasumi-1
1
L-1236 cell
Organ
2
intestine
2
large intestine
Date released
February, 2021
2
June, 2020
1
October, 2022
Software used
2
macs
1
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
month_released!
February, 2021
Showing 3 of 3 results
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Download
FileSet
DSR003UZC
released
Annotation file set
: Binding sites annotation for HCT-116 cell (HCT-116) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR739NAJ
released
Annotation file set
: Accessible chromatin annotation for Lung NHBE from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR889UTS
released
Annotation file set
: Accessible chromatin annotation for Digestive tract HCT 116 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP