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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
Annotation Category
3
Target gene links
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
42
large intestine
20
MCF-7
16
sigmoid colon
13
transverse colon
11
mammary gland epithelial cell
9
mammary epithelial cell
8
colonic mucosa
7
fibroblast of mammary gland
7
mucosa of rectum
6
HT-29
6
SW480
6
muscle layer of colon
6
myoepithelial cell of mammary gland
5
T47D
5
colon epithelial cell
4
RKO
4
luminal epithelial cell of mammary gland
3
HCT-116 cell
3
HCT116
3
MCF 10A
3
rectum smooth muscle tissue
2
mammary gland
1
Caco-2
1
LoVo
1
colon
1
rectal smooth muscle tissue
Disease term
2
colorectal adenocarcinoma
Organ
3
intestine
3
large intestine
0
mammary gland
Life stage
3
adult
Date released
2
September, 2022
1
February, 2021
Software used
1
chromhmm
1
encode-ccres
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
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skin of body
Showing 3 of 3 results
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Download
FileSet
DSR756UQP
released
Annotation file set
: Candidate regulatory elements for BSS00492 HCT116 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR815ZTC
released
Annotation file set
: Chromatin states for BSS00492 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR730OKU
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HCT116
Lab:
AMP-T2D consortium
Project:
AMP