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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
Annotation Category
2
Gene expression levels
2
cis-regulatory elements
1
Target gene links
Annotation type Category
1
ATAC-seq
1
snATAC-seq
Available data
2
bed bed3+
2
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
1
Homo sapiens
Biosample type
2
primary cell
Biosample term
105
monocyte
42
CD8-positive, alpha-beta T cell
40
common myeloid progenitor, CD34-positive
31
B cell
23
CD4-positive, alpha-beta memory T cell
20
fibroblast
16
natural killer cell
15
CD8-positive, alpha-beta memory T cell
15
macrophage
15
regulatory T cell
14
T cell
14
foreskin fibroblast
14
mononuclear cell
14
pericyte cell
13
osteoblast
13
trophoblast cell
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
T-helper 1 cell
12
astrocyte
12
excitatory neuron
12
fibroblast of lung
12
skeletal muscle myoblast
11
smooth muscle cell
10
T-helper 17 cell
10
T-helper 2 cell
10
neurosphere
9
erythroblast
9
mature neutrophil
9
skeletal muscle satellite cell
8
fibroblast of cardiac tissue
8
fibroblast of dermis
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
hepatic stellate cell
6
CD1c-positive myeloid dendritic cell
6
fibroblast of breast
6
glutamatergic neuron
6
mast cell
6
naive T cell
6
neutrophil
6
peripheral blood mononuclear cell
6
skin fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
foreskin melanocyte
5
inhibitory neuron
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
skeletal muscle fiber
4
T-cell
4
acute myeloid leukemia cell
4
adipocyte
4
alternatively activated macrophage
4
aortic adventitial fibroblast
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
cardiac fibroblast
4
cardiac muscle cell
4
fibroblast of peridontal ligament
4
memory B cell
4
mesenchymal stem cell
4
neuronal stem cell
4
plasma cell
4
preadipocyte
4
renal epithelial cell
4
skeletal muscle cell
4
smooth muscle cell of the brain vasculature
3
cardiac fibroblast
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
astrocyte of the spinal cord
3
bone marrow cell
3
erythroid cell
3
fibroblast of gingiva
3
fibroblast of the aortic adventitia
3
fibroblast of the conjunctiva
3
gabaergic neuron
3
inflammatory macrophage
3
mammary epithelial cell
3
mononuclear cell of bone marrow
3
myofibroblast cell
3
myotube
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neoplastic cell
3
peripheral blood stem cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
stromal cell of bone marrow
3
type I muscle cell
3
type II muscle cell
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
T follicular helper cell
2
Th2 cell
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
basal cell
2
blood vessel smooth muscle cell
2
brain pericyte
2
cardiac muscle myoblast
2
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
2
ciliated cell
2
columnar chondrocyte
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enteric neuron
2
enteric smooth muscle cell
2
erythrocyte
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
gamma-delta T cell
2
glial cell
2
head and neck squamous cell carcinoma
2
leukemic stem cell
2
leukocyte
2
mammary stem cell
2
mantle cell lymphoma cell
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
naive regulatory T cell
2
neuron
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
pancreatic stellate cell
2
peripheral blood-derived erythroblast
2
plasmacytoid dendritic cell
2
primordial germ cell
2
prostate gland cancer cell
2
regular cardiac myocyte
2
regular ventricular cardiac myocyte
2
renal proximal tubule cell
2
schwann cell
2
small cell ovarian carcinoma cell
2
smooth muscle cell of the esophagus
2
somatic muscle myotube
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
Glioblastoma
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
acute myeloid leukemia
1
alveolar cell type II
1
alveolar macrophage
1
aortic smooth muscle cell
1
bone cell
1
colon goblet cell
1
colorectal cancer
1
conventional dendritic cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dendritic cell
1
effector memory CD4-positive, alpha-beta T cell
1
endothelial cell of artery
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
granulocyte
1
head and neck neoplasia
1
hepatoblast
1
immature natural killer cell
1
induced T-regulatory cell
1
intestinal tuft cell
1
islet of Langerhans
1
kidney interstitial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
luteal cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature NK T cell
1
mature eosinophil
1
melanocyte
1
meningioma cell
1
metanephros
1
microglial cell
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid dendritic cell
1
myeloid leukocyte
1
naive t cell
1
natural killer cell mediated cytotoxicity
Date released
1
January, 2021
1
May, 2020
Software used
1
macs
Lab
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
1
AMP
1
T1D
RFA
1
AMP
1
T1D
organ_slims!
epithelium
Showing 2 of 2 results
table-tab-icon
matrix-icon
Download
FileSet
DSR260WKD
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of plasmacytoid_dendritic
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR321ZSO
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal plasmacytoid dendritic cell
Lab:
AMP-T2D consortium
Project:
AMP