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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
58
kidney
31
right kidney
30
renal cortex interstitium
30
renal pelvis
27
left kidney
9
left renal cortex interstitium
9
left renal pelvis
9
right renal pelvis
8
HEK293
8
right renal cortex interstitium
7
kidney tubule cell
6
glomerular visceral epithelial cell
5
epithelial cell of proximal tubule
5
glomerular endothelial cell
5
kidney glomerular epithelial cell
5
renal cortical epithelial cell
4
ACHN
4
Caki2
4
RCC 7860
4
kidney epithelial cell
4
renal cell carcinoma
3
G401
3
cortex of kidney
3
kidney capillary endothelial cell
2
HEK293T
2
kidney epithelium
1
RCC
1
glomerular epithelium
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
metanephros
1
parietal epithelial cell
1
renal connecting tubule
1
renal cortex tubule
1
renal intercalated cell
1
renal principal cell
1
ureteric bud
Disease term
2
renal cell adenocarcinoma
Organ
4
kidney
Life stage
3
adult
Date released
2
September, 2022
1
February, 2021
1
June, 2020
Software used
1
chromhmm
1
encode-ccres
1
macs
1
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
kidney inner medulla collecting duct principal cell
Showing 4 of 4 results
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Download
FileSet
DSR341ZDO
released
Annotation file set
: Candidate regulatory elements for BSS01474 RCC 7860 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR656AIC
released
Annotation file set
: Chromatin states for BSS01474 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR722TFK
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE RCC 7860
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR199VQC
released
Annotation file set
: Accessible chromatin annotation for Kidney RCC 7860 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP