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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
candidate regulatory elements
Annotation Category
25
Gene expression levels
4
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
4
DNase-seq
2
ChIP-seq
Available data
3
bed bed3+
bed bed9
1
bigWig
File set status
4
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
105
monocyte
44
heart
44
stomach
43
CD8-positive, alpha-beta T cell
42
kidney
35
brain
35
neural progenitor cell
34
muscle of arm
33
lung
31
retina
30
placenta
30
small intestine
29
adrenal gland
29
muscle of leg
28
large intestine
27
common myeloid progenitor, CD34-positive
27
muscle of back
26
left lung
25
A549
24
B cell
23
right lung
22
hematopoietic multipotent progenitor cell
22
thymus
21
renal cortex interstitium
21
renal pelvis
21
right kidney
20
breast cancer cell
20
fibroblast
20
liver
20
pigmented layer of retina
19
spinal cord
18
endothelial cell
18
left kidney
17
spleen
16
hepatocyte
15
MCF-7
15
heart left ventricle
15
macrophage
14
CD4-positive, alpha-beta memory T cell
14
adipocyte
14
foreskin fibroblast
14
foreskin keratinocyte
14
retinal pigment epithelial cell
13
HepG2
13
keratinocyte
12
CD4-positive, alpha-beta T cell
12
K562
12
cardiac muscle cell
12
excitatory neuron
12
neuroblastoma cell
12
pancreas
11
T cell
11
embryonic stem cell
11
endothelial cell of hepatic sinusoid
11
islet of Langerhans
11
mammary epithelial cell
11
pericyte cell
10
EndoC_BH1
10
Rhabdomyosarcoma
10
endothelial cell of umbilical vein
10
gastric cancer cell
10
natural killer cell
10
osteoblast
10
pancreatic ductal cell
10
regulatory T cell
10
sigmoid colon
10
smooth muscle cell
10
trophoblast cell
10
upper lobe of left lung
9
adipose tissue
9
astrocyte
9
diffuse intrinsic pontine glioma
9
fibroblast of cardiac tissue
9
liposarcoma
9
mesenchymal stem cell
9
neuronal stem cell
9
skeletal muscle myoblast
8
CD14-positive monocyte
8
CD8-positive, alpha-beta memory T cell
8
Peyer's patch
8
T-helper 1 cell
8
bronchial epithelial cell
8
caudate nucleus
8
ovary
8
pancreatic beta cell
8
psoas muscle
8
thyroid gland
8
tibial nerve
8
transverse colon
7
B-lymphoblastoid cell line
7
GM12878
7
H9
7
HEK293
7
body of pancreas
7
chorionic villus
7
erythroblast
7
esophageal adenocarcinoma
7
fibroblast cell line
7
fibroblast of lung
7
gastrocnemius medialis
7
mature neutrophil
7
mononuclear cell
7
pancreatic acinar cell
7
prostate gland
7
testis
6
22Rv1
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
H1-hESC
6
HL-60
6
HeLa-S3
6
IMR-90
6
SGBS preadipocytes
6
chondrocyte
6
choroid plexus epithelial cell
6
hESC cell
6
layer of hippocampus
6
left cardiac atrium
6
mammary gland epithelial cell
6
neuroblastoma cell line
6
neurosphere
6
right renal pelvis
6
skeletal muscle satellite cell
6
skeletal muscle tissue
substantia nigra
6
temporal lobe
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Caco-2 cell
5
Ewing sarcoma
5
GM12875
5
GM19240
5
GM23248
5
HAP-1
5
HT-29
5
Jurkat
5
KARPAS-422 cell
5
LHCN-M2
5
LNCAP
5
MG63
5
MM.1S
5
OCI-LY7
5
PC-3
5
PC-9
5
Rh-4 cell
5
SK-N-MC
5
SW480
5
T-helper 17 cell
5
T-helper 2 cell
5
WERI-Rb-1
5
acute myeloid leukemia
5
esophagus muscularis mucosa
5
esophagus squamous epithelium
5
heart right ventricle
5
hepatic stellate cell
5
kidney tubule cell
5
left renal cortex interstitium
5
lymphoblastoid cell line
5
muscle of trunk
5
omental fat pad
5
osteosarcoma
5
prostate cancer cell line
5
skin fibroblast
4
Ammon's horn
4
B-lymphocyte
4
COLO205
4
Daoy
4
GM08714
4
GM10248
4
GM10266
4
GM12873
4
GM12891
4
GM12892
4
GM19238
4
GM19239
4
HAC cell
4
HBMEC cell
4
HCT-116 cell
4
HS-SY-2 cell
4
HUES6
4
HuH-7
4
Ishikawa
4
KBM-7
4
LoVo cell
4
Mantle cell lymphoma
4
NAMALWA cell
4
NHEK
4
NT2-D1 cell
4
OCI-LY1
4
PANC-1 cell
Organ
4
epithelium
4
kidney
Life stage
2
unknown
Date released
1
February, 2021
1
January, 2020
1
June, 2020
1
September, 2022
Software used
2
macs
1
encode-ccres
1
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
substantia nigra
files.file_type!
bed bed9
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR225CIF
released
Annotation file set
: Candidate regulatory elements for BSS00387 glomerular endothelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR267ZHH
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE glomerular endothelial cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR885BSZ
released
Annotation file set
: Accessible chromatin annotation for Kidney HRGEC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR549KDR
released
Annotation file set
: Accessible chromatin annotation of kidney glomerular endothelial cell from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP