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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
Annotation Category
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
1
snATAC-seq
Available data
1
bed bed3+
1
bigWig
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
105
monocyte
42
CD8-positive, alpha-beta T cell
40
common myeloid progenitor, CD34-positive
28
B cell
23
CD4-positive, alpha-beta memory T cell
18
endothelial cell
17
fibroblast
15
CD8-positive, alpha-beta memory T cell
15
endothelial cell of umbilical vein
15
foreskin keratinocyte
15
hepatocyte
15
regulatory T cell
14
T cell
14
foreskin fibroblast
14
mononuclear cell
13
natural killer cell
13
osteoblast
13
trophoblast cell
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
T-helper 1 cell
12
astrocyte
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
macrophage
12
mammary epithelial cell
12
pericyte cell
12
skeletal muscle myoblast
11
keratinocyte
10
T-helper 17 cell
10
T-helper 2 cell
10
bronchial epithelial cell
10
neurosphere
9
erythroblast
9
mature neutrophil
9
pancreatic ductal cell
9
retinal pigment epithelial cell
9
skeletal muscle satellite cell
9
smooth muscle cell
8
dermis blood vessel endothelial cell
8
fibroblast of cardiac tissue
8
fibroblast of dermis
8
mammary gland epithelial cell
8
pancreatic beta cell
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
kidney tubule cell
7
pancreatic alpha cell
6
CD1c-positive myeloid dendritic cell
6
epithelial cell of prostate
6
fibroblast of breast
6
glutamatergic neuron
6
hepatic stellate cell
6
myoepithelial cell of mammary gland
6
naive T cell
6
neutrophil
6
pancreatic acinar cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
skin fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
choroid plexus epithelial cell
5
epithelial cell of proximal tubule
5
foreskin melanocyte
5
glomerular endothelial cell
5
glomerular visceral epithelial cell
5
inhibitory neuron
5
kidney glomerular epithelial cell
naive thymus-derived CD4-positive, alpha-beta T cell
5
pancreatic delta cell
5
renal cortical epithelial cell
5
skeletal muscle fiber
5
tracheal epithelial cell
4
T-cell
4
acute myeloid leukemia cell
4
alternatively activated macrophage
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
cardiac muscle cell
4
dermis lymphatic vessel endothelial cell
4
fibroblast of peridontal ligament
4
iris pigment epithelial cell
4
kidney epithelial cell
4
luminal epithelial cell of mammary gland
4
memory B cell
4
mesenchymal stem cell
4
non-pigmented ciliary epithelial cell
4
plasma cell
4
preadipocyte
4
renal epithelial cell
4
skeletal muscle cell
4
smooth muscle cell of the brain vasculature
3
cardiac fibroblast
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
astrocyte of the spinal cord
3
bone marrow cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
epithelial cell of esophagus
3
erythroid cell
3
fibroblast of gingiva
3
fibroblast of the aortic adventitia
3
fibroblast of the conjunctiva
3
gabaergic neuron
3
inflammatory macrophage
3
kidney capillary endothelial cell
3
mast cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neoplastic cell
3
peripheral blood stem cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
stromal cell of bone marrow
3
type I muscle cell
3
type II muscle cell
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
T follicular helper cell
2
Th2 cell
2
adipocyte
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
basal cell
2
blood vessel smooth muscle cell
2
brain pericyte
2
capillary endothelial cell
2
cardiac muscle myoblast
2
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
2
ciliated cell
2
club cell
2
columnar chondrocyte
2
dermis microvascular lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
epidermal melanocyte
2
epithelial cell of amnion
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
gamma-delta T cell
2
glial cell
2
head and neck squamous cell carcinoma
2
leukemic stem cell
2
leukocyte
2
mammary stem cell
2
mantle cell lymphoma cell
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
meso-epithelial cell
2
mesothelial cell
2
myofibroblast cell
2
naive regulatory T cell
2
neuron
2
neuronal stem cell
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
peripheral blood-derived erythroblast
2
plasmacytoid dendritic cell
2
primordial germ cell
2
prostate gland cancer cell
2
regular cardiac myocyte
2
renal proximal tubule cell
2
schwann cell
2
small cell ovarian carcinoma cell
2
smooth muscle cell of the esophagus
2
somatic muscle myotube
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
Glioblastoma
Organ
1
epithelium
Date released
1
November, 2021
Software used
1
macs
Lab
1
Bing Ren, UCSD
Project
1
ENCODE
RFA
1
ENCODE3
biosample_term_name!
naive thymus-derived CD4-positive, alpha-beta T cell
organ_slims!
lung
Showing 1 of 1 results
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Download
FileSet
DSR812RPT
released
Annotation file set
: Accessible chromatin annotation of Fetal Cholangiocytes from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE