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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
1
candidate regulatory elements
1
chromatin state
Annotation Category
5
cis-regulatory elements
4
Target gene links
Annotation type Category
3
snATAC-seq
2
ChIP-seq
1
DNase-seq
Available data
4
bed bed3+
3
bigWig
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
4
GRCh38
Organism
5
Homo sapiens
Biosample type
3
primary cell
2
cell line
Biosample term
20
pigmented layer of retina
16
endothelial cell
15
hepatocyte
12
endothelial cell of hepatic sinusoid
12
retinal pigment epithelial cell
10
endothelial cell of umbilical vein
9
foreskin keratinocyte
8
EndoC_BH1
8
coronary artery
8
mammary gland epithelial cell
8
pancreatic beta cell
8
pancreatic ductal cell
8
tibial artery
7
keratinocyte
7
pancreatic acinar cell
7
pancreatic alpha cell
6
aorta
6
ascending aorta
6
kidney tubule cell
6
thoracic aorta
5
breast epithelium
5
bronchial epithelial cell
5
choroid plexus epithelial cell
5
colon epithelial cell
5
epithelial cell of prostate
5
esophagus squamous epithelium
5
glomerular visceral epithelial cell
5
pancreatic delta cell
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
epithelial cell of proximal tubule
4
fibroblast of pulmonary artery
4
glomerular endothelial cell
4
kidney glomerular epithelial cell
4
luminal epithelial cell of mammary gland
4
myoepithelial cell of mammary gland
4
renal cortical epithelial cell
4
type II pneumocyte
3
cardiac fibroblast
3
aortic endothelial cell
3
brain microvascular endothelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
iris pigment epithelial cell
3
kidney capillary endothelial cell
3
kidney epithelial cell
3
mammary epithelial cell
3
non-pigmented ciliary epithelial cell
3
pulmonary artery endothelial cell
3
smooth muscle cell of the brain vasculature
3
type I pneumocyte
2
capillary endothelial cell
2
club cell
2
endocardial cell
2
epidermal melanocyte
2
epithelial cell of amnion
2
epithelial cell of esophagus
2
fibroblast of the aortic adventitia
2
lung microvascular endothelial cell
2
mesothelial cell
2
pancreatic polypeptide-secreting cell
1
basal cell of epidermis
1
cardiac endothelial cell
1
cardiac fibroblast
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
dermis microvascular lymphatic vessel endothelial cell
1
eccrine cell
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
foveolar cell of stomach
1
gastric goblet cell
1
glomerular epithelium
1
goblet cell
1
granular cell of epidermis
1
kidney distal convoluted tubule epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lung neuroendocrine cell
1
myoepithelial cell
1
neuroendocrine cell
1
non keratinizing barrier epithelial cell
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic endothelial cell
1
paneth cell
1
parietal cell
1
parietal epithelial cell
1
peptic cell
1
placental villus capillary endothelial cell
1
renal cortex tubule
1
renal intercalated cell
1
renal principal cell
1
respiratory goblet cell
1
small intestine goblet cell
1
stomach neuroendocrine cell
1
thyroid follicular cell
1
tracheal epithelial cell
1
type B pancreatic cell
1
type I cell of adrenal cortex
1
type II cell of adrenal cortex
1
ureteric bud
1
urothelial cell
Organ
5
epithelium
5
intestine
5
large intestine
0
vasculature
Life stage
2
unknown
Date released
3
November, 2021
2
September, 2022
Software used
3
macs
1
chromhmm
1
r
Lab
3
Bing Ren, UCSD
2
AMP-T2D consortium
Project
3
ENCODE
2
AMP
RFA
3
ENCODE3
2
AMP
month_released!
February, 2021
Showing 5 of 5 results
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Download
FileSet
DSR635VAQ
released
Annotation file set
: Candidate regulatory elements for BSS00223 colon epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR024YCW
released
Annotation file set
: Chromatin states for BSS00223 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR609IPL
released
Annotation file set
: Accessible chromatin annotation of Colon Epithelial Cell 3 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR419PGV
released
Annotation file set
: Accessible chromatin annotation of Colon Epithelial Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR903BJH
released
Annotation file set
: Accessible chromatin annotation of Colon Epithelial Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE