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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
Annotation Category
1
Gene expression levels
1
cis-regulatory elements
Available data
1
bed bed3+
1
bigWig
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
primary cell
1
tissue
Biosample term
65
heart
63
stomach
58
kidney
53
brain
50
muscle of arm
49
lung
45
small intestine
44
muscle of leg
44
placenta
43
A549
43
adrenal gland
42
large intestine
41
muscle of back
39
left lung
38
neural progenitor cell
34
retina
34
right lung
34
thymus
32
hematopoietic multipotent progenitor cell
31
right kidney
30
renal cortex interstitium
30
renal pelvis
28
liver
27
left kidney
26
spinal cord
23
heart left ventricle
23
spleen
20
MCF-7
20
breast cancer cell
20
pigmented layer of retina
17
K562
16
adipose tissue
16
embryonic stem cell
16
sigmoid colon
13
HepG2
13
gastrocnemius medialis
13
pancreas
13
upper lobe of left lung
12
neuroblastoma cell
12
psoas muscle
12
testis
12
thyroid gland
12
tibial nerve
11
Peyer's patch
11
adipocyte
11
heart right ventricle
11
ovary
11
transverse colon
10
EndoC_BH1
10
Rhabdomyosarcoma
10
cardiac muscle cell
10
chorionic villus
10
gastric cancer cell
10
layer of hippocampus
10
muscle of trunk
10
skeletal muscle tissue
9
HeLa-S3
9
body of pancreas
9
caudate nucleus
9
coronary artery
9
diffuse intrinsic pontine glioma
9
endocrine pancreas
9
liposarcoma
9
prostate gland
9
temporal lobe
8
22Rv1
8
H9
8
HEK293
8
SK-N-DZ
8
esophagus squamous epithelium
8
islet of Langerhans
8
left cardiac atrium
8
left renal cortex interstitium
8
substantia nigra
8
tibial artery
7
B-lymphoblastoid cell line
7
GM06990
7
GM12864
7
GM12865
7
GM12878
7
HL-60
7
IMR-90
7
NAMALWA cell
7
SK-N-MC
7
SK-N-SH
7
T-cell acute lymphoblastic leukemia
7
aorta
7
breast epithelium
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
fibroblast cell line
7
left renal pelvis
7
omental fat pad
7
right renal pelvis
7
tongue
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19240
6
GM23248
6
H1-hESC
6
HAP-1
6
HT-29
6
KARPAS-422 cell
6
LHCN-M2
6
MG63
6
MM.1S
6
NT2-D1 cell
6
OCI-LY7
6
PC-3
6
PC-9
6
RWPE1
6
Rh-4 cell
6
SGBS preadipocytes
6
SW480
6
WERI-Rb-1
6
angular gyrus
6
ascending aorta
6
cerebellum
6
chondrocyte
6
endodermal cell
6
globus pallidus
6
hESC cell
6
lower leg skin
6
mesodermal cell
6
midbrain
6
neuroblastoma cell line
6
right atrium auricular region
6
right renal cortex interstitium
6
thoracic aorta
6
trophoblast
5
Ammon's horn
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM19238
5
GM19239
5
HUES6
5
HuH-7
5
Jurkat
5
KBM-7
5
LNCAP
5
LNCaP clone FGC
5
LoVo cell
5
OCI-LY1
5
RPMI8226
5
SJSA1
5
T47D
5
WI38
5
acute myeloid leukemia
5
cingulate gyrus
5
colonic mucosa
5
esophagus
5
immortal human breast epithelial cell line cell
5
limb
5
lymphoblastoid cell line
5
mesenchymal stem cell
5
muscle layer of duodenum
5
neuronal stem cell
5
osteosarcoma
5
parathyroid adenoma
5
prostate cancer cell line
5
putamen
5
urinary bladder
4
A172
4
ACHN
4
B cell
4
Brodmann (1909) area 46
4
COLO205
4
Caki2
4
GM04503
4
GM04504
4
GM12873
4
GM18507
4
H4
4
H7-hESC
4
HAC cell
4
HBMEC cell
4
HCT-116 cell
4
HK-2 cell
4
HS-SY-2 cell
4
HUES64
4
L1-S8
4
M059J
4
Mantle cell lymphoma
4
NB4
4
NHEK
4
Normal Human Astrocytes
Organ
1
epithelium
Date released
1
February, 2024
Software used
1
macs
Lab
1
Kyle Gaulton, UCSD
Project
1
AMP
RFA
1
AMP
biosample_type!
primary cell
lab.title!
Stephen Parker, UMich
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR369PUU
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Endothelial
Lab:
Kyle Gaulton, UCSD
Project:
AMP