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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
Annotation Category
16
Gene expression levels
5
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
4
bed bed3+
1
bed bed9
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
105
monocyte
65
heart
63
stomach
58
kidney
53
brain
50
muscle of arm
49
lung
45
small intestine
44
muscle of leg
44
placenta
43
A549
43
CD8-positive, alpha-beta T cell
43
adrenal gland
42
large intestine
41
muscle of back
40
common myeloid progenitor, CD34-positive
39
left lung
39
neural progenitor cell
35
B cell
34
retina
34
right lung
34
thymus
32
hematopoietic multipotent progenitor cell
31
right kidney
30
renal cortex interstitium
30
renal pelvis
29
liver
27
left kidney
26
spinal cord
23
CD4-positive, alpha-beta memory T cell
23
fibroblast
23
heart left ventricle
23
spleen
22
endothelial cell
20
MCF-7
20
breast cancer cell
20
pigmented layer of retina
19
adipocyte
19
hepatocyte
18
K562
18
macrophage
17
natural killer cell
16
adipose tissue
16
embryonic stem cell
16
sigmoid colon
15
CD8-positive, alpha-beta memory T cell
15
T cell
15
keratinocyte
15
retinal pigment epithelial cell
15
trophoblast cell
14
HepG2
14
pericyte cell
14
regulatory T cell
13
cardiac muscle cell
13
gastrocnemius medialis
13
mononuclear cell
13
pancreas
13
smooth muscle cell
13
upper lobe of left lung
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
excitatory neuron
12
neuroblastoma cell
12
osteoblast
12
psoas muscle
12
skeletal muscle myoblast
12
testis
12
thyroid gland
12
tibial nerve
11
bronchial epithelial cell
11
caudate nucleus
11
endothelial cell of hepatic sinusoid
11
fibroblast of cardiac tissue
11
fibroblast of lung
11
heart right ventricle
11
islet of Langerhans
11
mammary epithelial cell
11
mesenchymal stem cell
11
neuronal stem cell
11
ovary
11
transverse colon
10
EndoC_BH1
10
Rhabdomyosarcoma
10
astrocyte
10
chorionic villus
10
endothelial cell of umbilical vein
10
foreskin fibroblast
10
foreskin keratinocyte
10
gastric cancer cell
10
layer of hippocampus
10
mammary gland epithelial cell
10
muscle of trunk
10
pancreatic ductal cell
10
skeletal muscle tissue
10
temporal lobe
9
HeLa-S3
9
Peyer's patch
9
T-helper 1 cell
9
T-helper 17 cell
9
body of pancreas
9
coronary artery
9
diffuse intrinsic pontine glioma
9
endocrine pancreas
9
liposarcoma
9
neurosphere
9
prostate gland
9
substantia nigra
8
22Rv1
8
GM12878
8
H9
8
HEK293
8
SK-N-DZ
8
T-helper 2 cell
8
choroid plexus epithelial cell
8
esophagus squamous epithelium
8
fibroblast of dermis
8
left cardiac atrium
8
left renal cortex interstitium
8
pancreatic beta cell
8
skeletal muscle satellite cell
8
tibial artery
7
B-lymphoblastoid cell line
7
GM06990
7
GM12864
7
GM12865
7
H1-hESC
7
HL-60
7
IMR-90
7
aorta
7
breast epithelium
7
colonic mucosa
7
epithelial cell of prostate
7
erythroblast
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
fibroblast cell line
7
hepatic stellate cell
7
kidney tubule cell
7
left renal pelvis
7
mature neutrophil
7
omental fat pad
7
pancreatic acinar cell
7
right renal pelvis
7
tongue
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19240
6
GM23248
6
HAP-1
6
HT-29
6
KARPAS-422 cell
6
SW480
6
angular gyrus
6
ascending aorta
6
cerebellum
6
chondrocyte
6
cingulate gyrus
6
duodenal mucosa
6
endodermal cell
6
fibroblast of villous mesenchyme
6
globus pallidus
6
hESC cell
6
lower leg skin
6
mast cell
6
mesodermal cell
6
midbrain
6
neuroblastoma cell line
6
neutrophil
6
right atrium auricular region
6
right renal cortex interstitium
6
skin fibroblast
6
thoracic aorta
6
trophoblast
5
Ammon's horn
5
CD14-positive, CD16-negative classical monocyte
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM19238
5
GM19239
5
HUES6
5
HuH-7
5
Jurkat
5
LHCN-M2
5
LNCaP clone FGC
5
LoVo cell
Organ
5
epithelium
5
kidney
Life stage
3
unknown
Date released
2
September, 2022
1
February, 2021
1
January, 2020
1
October, 2022
Software used
2
chromhmm
1
encode-ccres
1
macs
1
r
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
relevant_life_stage!
postnatal
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR081IKY
released
Annotation file set
: Binding sites annotation for epithelial cell of proximal tubule (RPTEC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR691IGQ
released
Annotation file set
: Candidate regulatory elements for BSS00310 epithelial cell of proximal tubule from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR129CVZ
released
Annotation file set
: Chromatin states for BSS00310 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR711XKR
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE epithelial cell of proximal tubule
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR184YBQ
released
Annotation file set
: Accessible chromatin annotation of kidney epithelial cell of proximal tubule from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP