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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
Annotation Category
1
Genetic variant effects
1
Target gene links
1
cis-regulatory elements
Annotation type Category
1
snATAC-seq
Available data
1
bed bed3+
1
bigWig
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
102
monocyte
35
CD8-positive, alpha-beta T cell
26
common myeloid progenitor, CD34-positive
23
B cell
18
CD4-positive, alpha-beta memory T cell
17
fibroblast
15
endothelial cell
14
CD8-positive, alpha-beta memory T cell
14
T cell
13
hepatocyte
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
macrophage
12
mononuclear cell
12
pericyte cell
11
regulatory T cell
10
astrocyte
10
endothelial cell of umbilical vein
9
T-helper 1 cell
9
erythroblast
9
fibroblast of lung
9
natural killer cell
9
smooth muscle cell
9
trophoblast cell
8
CD14-positive monocyte
8
T-helper 17 cell
8
T-helper 2 cell
8
fibroblast of cardiac tissue
8
foreskin keratinocyte
8
pancreatic beta cell
8
skeletal muscle myoblast
8
skeletal muscle satellite cell
7
fibroblast of dermis
7
keratinocyte
7
mammary gland epithelial cell
7
mature neutrophil
7
osteoblast
7
pancreatic alpha cell
6
glutamatergic neuron
6
kidney tubule cell
6
naive T cell
6
neurosphere
6
pancreatic acinar cell
6
pancreatic ductal cell
6
retinal pigment epithelial cell
6
skin fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
bronchial epithelial cell
5
foreskin fibroblast
5
hepatic stellate cell
5
inhibitory neuron
5
pancreatic delta cell
5
skeletal muscle fiber
4
CD4-positive, alpha-beta T cell
4
alternatively activated macrophage
4
choroid plexus epithelial cell
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
epithelial cell of prostate
4
epithelial cell of proximal tubule
4
fibroblast of breast
4
fibroblast of mammary gland
4
fibroblast of pulmonary artery
4
glomerular endothelial cell
4
glomerular visceral epithelial cell
4
kidney glomerular epithelial cell
4
luminal epithelial cell of mammary gland
4
memory B cell
4
myoepithelial cell of mammary gland
4
neutrophil
4
renal cortical epithelial cell
4
type II pneumocyte
3
cardiac fibroblast
3
CD1c-positive myeloid dendritic cell
3
aortic endothelial cell
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
brain microvascular endothelial cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
fibroblast of peridontal ligament
3
gabaergic neuron
3
inflammatory macrophage
3
iris pigment epithelial cell
3
kidney capillary endothelial cell
3
kidney epithelial cell
3
mammary epithelial cell
3
mesenchymal stem cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
non-pigmented ciliary epithelial cell
3
pulmonary artery endothelial cell
3
skeletal muscle cell
3
smooth muscle cell of the brain vasculature
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
Muller cell
2
T follicular helper cell
2
acute myeloid leukemia cell
2
adipocyte
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
aortic adventitial fibroblast
2
astrocyte of the spinal cord
2
basal cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
capillary endothelial cell
2
cardiac muscle cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
epidermal melanocyte
2
epithelial cell of amnion
2
epithelial cell of esophagus
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of gingiva
2
fibroblast of the aortic adventitia
2
fibroblast of the conjunctiva
2
foreskin melanocyte
2
gamma-delta T cell
2
glial cell
2
leukocyte
2
lung microvascular endothelial cell
2
mammary stem cell
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesothelial cell
2
naive regulatory T cell
2
neuron
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
plasma cell
2
plasmacytoid dendritic cell
2
regular cardiac myocyte
2
renal epithelial cell
2
schwann cell
2
smooth muscle cell of the esophagus
2
stromal cell of bone marrow
1
B-Lymphocytes
1
B-lymphocyte
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
Glioblastoma
1
Ishikawa
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
alveolar macrophage
1
basal cell of epidermis
1
brain pericyte
1
cardiac endothelial cell
1
cardiac fibroblast
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
conventional dendritic cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
eccrine cell
1
endothelial cell of artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
erythrocyte
1
erythroid cell
1
extravillous trophoblast
1
fetal thymocyte
1
foveolar cell of stomach
1
gastric goblet cell
1
goblet cell
1
granular cell of epidermis
1
hepatoblast
1
immature natural killer cell
1
intestinal tuft cell
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
Date released
1
November, 2021
Software used
1
macs
Lab
1
Bing Ren, UCSD
Project
1
ENCODE
RFA
1
ENCODE3
month_released!
February, 2021
organ_slims!
placenta
Showing 1 of 1 results
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Download
FileSet
DSR681CET
released
Annotation file set
: Accessible chromatin annotation of Naive T cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE