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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
2
candidate regulatory elements
Annotation Category
7
cis-regulatory elements
2
Target gene links
Annotation type Category
5
snATAC-seq
2
ChIP-seq
2
DNase-seq
Available data
7
bed bed3+
4
bigWig
2
bed bed9
1
bigBed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
3
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
105
monocyte
41
CD8-positive, alpha-beta T cell
27
common myeloid progenitor, CD34-positive
23
B cell
21
endothelial cell
20
fibroblast
15
hepatocyte
15
macrophage
14
CD4-positive, alpha-beta memory T cell
13
foreskin fibroblast
13
natural killer cell
13
pericyte cell
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
mammary epithelial cell
12
osteoblast
12
regulatory T cell
11
astrocyte
11
endothelial cell of umbilical vein
11
foreskin keratinocyte
11
smooth muscle cell
10
T cell
10
skeletal muscle myoblast
9
CD4-positive, alpha-beta T cell
9
T-helper 1 cell
9
fibroblast of lung
9
keratinocyte
9
trophoblast cell
8
CD14-positive monocyte
8
CD8-positive, alpha-beta memory T cell
8
bronchial epithelial cell
8
mononuclear cell
8
pancreatic beta cell
8
pancreatic ductal cell
8
retinal pigment epithelial cell
7
T-helper 17 cell
7
T-helper 2 cell
7
erythroblast
7
neurosphere
7
pancreatic alpha cell
7
skeletal muscle satellite cell
6
dermis blood vessel endothelial cell
6
endothelial cell of lymphatic vessel
6
fibroblast of mammary gland
6
fibroblast of pulmonary artery
6
fibroblast of villous mesenchyme
6
glutamatergic neuron
6
hepatic stellate cell
6
mast cell
6
peripheral blood mononuclear cell
5
CD1c-positive myeloid dendritic cell
5
fibroblast of cardiac tissue
5
fibroblast of dermis
5
inhibitory neuron
5
kidney tubule cell
5
mammary gland epithelial cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
pancreatic acinar cell
5
pancreatic delta cell
5
pulmonary artery endothelial cell
5
skeletal muscle fiber
5
tracheal epithelial cell
4
T-cell
4
acute myeloid leukemia cell
4
adipocyte
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
cardiac fibroblast
4
cardiac muscle cell
4
choroid plexus epithelial cell
4
endocardial cell
4
epithelial cell of prostate
4
epithelial cell of proximal tubule
4
fibroblast of breast
4
foreskin melanocyte
4
glomerular visceral epithelial cell
4
kidney glomerular epithelial cell
4
memory B cell
4
myoepithelial cell of mammary gland
4
neuronal stem cell
4
neutrophil
4
plasma cell
4
preadipocyte
4
renal cortical epithelial cell
4
renal epithelial cell
4
skin fibroblast
4
type II pneumocyte
3
cardiac fibroblast
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
bone marrow cell
3
brain microvascular endothelial cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
enterocyte
3
erythroid cell
3
fibroblast of peridontal ligament
3
gabaergic neuron
3
glomerular endothelial cell
3
iris pigment epithelial cell
3
kidney epithelial cell
3
luminal epithelial cell of mammary gland
3
lung microvascular endothelial cell
3
mesenchymal stem cell
3
mononuclear cell of bone marrow
3
myofibroblast cell
3
myotube
3
naive B cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neoplastic cell
3
non-pigmented ciliary epithelial cell
3
peripheral blood stem cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
skeletal muscle cell
3
smooth muscle cell of the brain vasculature
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
T follicular helper cell
2
Th2 cell
2
astrocyte of the spinal cord
2
basal cell
2
blood vessel smooth muscle cell
2
brain pericyte
2
capillary endothelial cell
2
cardiac muscle myoblast
2
central memory CD8-positive, alpha-beta T cell
2
cholangiocyte
2
chronic lymphocytic leukemia cell
2
ciliated cell
2
club cell
2
columnar chondrocyte
2
dermis lymphatic vessel endothelial cell
2
dermis microvascular lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
erythrocyte
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of gingiva
2
fibroblast of the aortic adventitia
2
fibroblast of the conjunctiva
2
gamma-delta T cell
2
glial cell
2
head and neck squamous cell carcinoma
2
kidney capillary endothelial cell
2
leukemic stem cell
2
leukocyte
2
mantle cell lymphoma cell
2
mature natural killer cell
2
mature neutrophil
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
meso-epithelial cell
2
mesothelial cell
2
naive regulatory T cell
2
neuron
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
peripheral blood-derived erythroblast
2
plasmacytoid dendritic cell
2
primordial germ cell
2
prostate gland cancer cell
2
regular ventricular cardiac myocyte
2
renal proximal tubule cell
2
schwann cell
2
small cell ovarian carcinoma cell
2
smooth muscle cell of the esophagus
2
somatic muscle myotube
2
stromal cell of bone marrow
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
Glioblastoma
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated CD4-positive, alpha-beta T cell
Organ
7
musculature of body
Life stage
2
adult
1
unknown
Date released
3
November, 2021
1
February, 2021
1
February, 2024
1
May, 2022
1
September, 2022
Software used
5
macs
1
encode-ccres
1
r
Lab
3
AMP-T2D consortium
3
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
4
AMP
3
ENCODE
RFA
3
AMP
3
ENCODE3
1
AMP2
Showing 7 of 7 results
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Download
FileSet
DSR972CPB
released
Annotation file set
: Candidate regulatory elements for BSS01576 skeletal muscle satellite cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR534XMQ
released
Annotation file set
: Accessible chromatin from snATAC-seq of skeletal muscle satellite cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR116URN
released
Annotation file set
: Accessible chromatin annotation of Satellite Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR347TWG
released
Annotation file set
: Accessible chromatin annotation of Fetal Satellite Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR101HMU
released
Annotation file set
: Accessible chromatin annotation of Fetal Satellite Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR650BYN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE skeletal muscle satellite cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR724QWN
released
Annotation file set
: Cell type chromatin broad peaks and bw of skeletal muscle satellite cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP