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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
129
monocyte
59
HeLa-S3
53
H1-hESC
53
heart
52
kidney
46
neural progenitor cell
46
stomach
44
brain
43
islet of Langerhans
42
CD8-positive, alpha-beta T cell
41
A549
39
endothelial cell
36
liver
35
lung
34
K562
34
adrenal gland
34
hepatocyte
34
muscle of arm
34
placenta
34
retina
34
small intestine
32
fibroblast
31
muscle of leg
30
B cell
30
macrophage
29
large intestine
28
thymus
26
common myeloid progenitor, CD34-positive
26
left lung
25
muscle of back
24
adipose tissue
24
hematopoietic multipotent progenitor cell
23
CD14-positive monocyte
23
EndoC_BH1
23
adipocyte
23
heart left ventricle
23
pancreatic ductal cell
23
right lung
23
smooth muscle cell
22
right kidney
21
epithelial cell of proximal tubule
21
pericyte cell
21
regulatory T cell
21
renal pelvis
21
spinal cord
20
breast cancer cell
20
pigmented layer of retina
20
renal cortex interstitium
19
T cell
19
glomerular endothelial cell
19
spleen
18
CD4-positive, alpha-beta memory T cell
18
HFFc6
18
embryonic stem cell
18
keratinocyte
18
left kidney
17
MCF-7
17
T-helper 1 cell
16
endothelial cell of hepatic sinusoid
16
induced pluripotent stem cell
16
pancreas
16
subcutaneous adipose tissue
16
tibial nerve
15
HepG2
15
T-helper 17 cell
15
astrocyte
15
mesenchymal stem cell
15
osteoblast
14
CD8-positive, alpha-beta memory T cell
14
GM12878
14
caudate nucleus
14
coronary artery
14
natural killer cell
14
pancreatic acinar cell
14
pancreatic beta cell
14
retinal pigment epithelial cell
14
trophoblast cell
13
endothelial cell of umbilical vein
13
excitatory neuron
13
fibroblast of cardiac tissue
13
right atrium auricular region
12
body of pancreas
12
heart right ventricle
12
lymphoblastoid cell line
12
mononuclear cell
12
neuroblastoma cell
12
pancreatic alpha cell
12
sigmoid colon
12
skeletal muscle myoblast
12
tibial artery
11
T-helper 2 cell
11
cardiac muscle cell
11
erythroblast
11
foreskin fibroblast
11
foreskin keratinocyte
11
mammary gland epithelial cell
11
neutrophil
11
ovary
11
pancreatic delta cell
11
psoas muscle
11
skeletal muscle satellite cell
11
thyroid gland
10
Rhabdomyosarcoma
10
fibroblast of lung
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
left cardiac atrium
10
progenitor cell of endocrine pancreas
10
skeletal muscle tissue
10
testis
9
aorta
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
frontal cortex
9
liposarcoma
9
substantia nigra
9
transverse colon
8
B-lymphoblastoid cell line
8
H9
8
ascending aorta
8
fibroblast cell line
8
fibroblast of dermis
8
gastrocnemius medialis
8
hepatic stellate cell
8
layer of hippocampus
8
lymphocyte
8
mammary epithelial cell
8
omental fat pad
8
pituitary stalk
8
prostate gland
8
putamen
8
skeletal muscle fiber
8
skin fibroblast
8
temporal lobe
7
Ammon's horn
7
CD4-positive, alpha-beta T cell
7
bronchial epithelial cell
7
cardiomyocytes (cardiac muscle cell)
7
colon epithelial cell
7
endocrine pancreas
7
epithelial cell of prostate
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
mature neutrophil
7
mesendoderm
7
muscle of trunk
7
neuronal stem cell
7
pancreatic stellate cell
7
upper lobe of left lung
6
22Rv1
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Caco-2 cell
6
Chondroid Chordoma
6
GM06990
6
GM12865
6
HUES8
6
Jurkat
6
Peyer's patch
6
WERI-Rb-1
6
cardiac precursors (cardiac muscle cell)
6
cerebellum
6
chondrocyte
6
choroid plexus epithelial cell
6
endodermal cell
6
hESC cell
6
iPSC derived cell line
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
neuroblastoma cell line
6
plasma cell
6
smooth muscle cell of the coronary artery
6
thoracic aorta
6
trophoblast
6
type I muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
annotation_type!
Fine-mapped variants
candidate regulatory elements
award.project!
T1D
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP