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Schema
Citing CMDGA
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Annotation type
1
chromatin state
Annotation Category
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
Available data
1
bed bed9
File set status
1
released
Genome assembly (visualization)
9
hg19
1
GRCh38
Organism
1
Homo sapiens
Biosample type
1
in vitro differentiated cells
Biosample term
100
monocyte
54
HeLa-S3
38
H1-hESC
27
neural progenitor cell
23
kidney
22
K562
22
fibroblast
22
heart
20
stomach
19
HFFc6
19
brain
19
endothelial cell
19
macrophage
19
pericyte cell
18
A549
18
hepatocyte
17
lung
17
muscle of arm
16
endothelial cell of hepatic sinusoid
16
small intestine
15
adrenal gland
15
placenta
14
muscle of leg
14
smooth muscle cell
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
large intestine
13
left lung
13
muscle of back
11
B cell
11
T cell
11
astrocyte
11
right kidney
11
right lung
11
thymus
10
hematopoietic multipotent progenitor cell
10
liver
10
renal cortex interstitium
10
renal pelvis
9
CD4-positive, alpha-beta memory T cell
9
heart left ventricle
9
left kidney
8
coronary artery
8
islet of Langerhans
8
spinal cord
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
adipose tissue
7
colon epithelial cell
7
left cardiac atrium
7
lymphocyte
6
HepG2
6
caudate nucleus
6
fibroblast of cardiac tissue
6
iPSC derived cell line
6
keratinocyte
6
lymphoblastoid cell line
6
mononuclear cell
6
olfactory receptor cell
6
pancreas
6
pancreatic acinar cell
6
pancreatic ductal cell
6
right atrium auricular region
6
tibial artery
5
MCF-7
5
body of pancreas
5
cerebellum
5
cortical cell of adrenal gland
5
erythroblast
5
frontal cortex
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
5
mammary gland epithelial cell
5
omental fat pad
5
ovary
5
putamen
5
regulatory T cell
5
retina
5
sigmoid colon
5
skeletal muscle satellite cell
5
substantia nigra
5
thyroid gland
5
transverse colon
5
trophoblast cell
5
type II pneumocyte
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
ascending aorta
4
blood vessel smooth muscle cell
4
chorionic villus
4
endocrine pancreas
4
enteric smooth muscle cell
4
foreskin keratinocyte
4
gabaergic neuron
4
gastrocnemius medialis
4
glutamatergic neuron
4
heart right ventricle
4
layer of hippocampus
4
muscle of trunk
4
natural killer cell
4
osteoblast
4
pancreatic beta cell
4
psoas muscle
4
skin fibroblast
4
skin of body
4
smooth muscle cell of the esophagus
4
subcutaneous adipose tissue
4
testis
3
cardiac fibroblast
3
Ammon's horn
3
CD4-positive helper T cell
3
HCT116
3
Peyer's patch
3
adipocyte
3
blood cell
3
cardiac muscle cell
3
chorion membrane
3
endocardial cell
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
endothelial cell of umbilical vein
3
enteric neuron
3
enterocyte
3
esophagus
3
esophagus muscularis mucosa
3
fibroblast of dermis
3
fibroblast of lung
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
left renal cortex interstitium
3
left renal pelvis
3
mesothelial cell
3
microglial cell
3
naive T cell
3
neurosphere
3
neutrophil
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic alpha cell
3
prostate gland
3
retinal pigment epithelial cell
3
right renal cortex interstitium
3
right renal pelvis
3
schwann cell
3
skeletal muscle fiber
3
skeletal muscle tissue
3
thoracic aorta
3
type B pancreatic cell
3
type I pneumocyte
3
upper lobe of left lung
3
vagina
2
22Rv1
2
Brodmann (1909) area 46
2
CD4-positive, alpha-beta T cell
2
CD8-positive, alpha-beta T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
LNCaP clone FGC
2
Muller cell
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
alveolar macrophage
2
amygdala
2
angular gyrus
2
anterior cingulate cortex
2
aorta
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
basal cell of epidermis
2
brain microvascular endothelial cell
2
breast epithelium
2
bronchial epithelial cell
2
cardiac endothelial cell
2
cerebellar cortex
2
choroid plexus epithelial cell
2
ciliated cell
2
cingulate gyrus
2
club cell
2
colon goblet cell
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
eccrine cell
2
endodermal cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
Life stage
1
embryonic
Date released
1
September, 2022
Software used
1
chromhmm
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
annotation_type!
Fine-mapped variants
files.file_type!
bigBed bed9
organ_slims!
nerve
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP