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Citing CMDGA
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Annotation type
3
eQTL
1
representative DNase hypersensitivity sites
Annotation Category
3
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
3
RNA-seq
1
DNase-seq
Available data
1
tsv
File set status
4
released
Genome assembly (visualization)
3
hg18
Organism
4
Homo sapiens
Biosample type
3
tissue
1
in vitro differentiated cells
Biosample term
1
liver
1
myocyte
1
omental fat pad
1
subcutaneous adipose tissue
Organ
2
adipose tissue
2
connective tissue
1
liver
Life stage
3
adult
Date released
3
August, 2021
1
February, 2021
Software used
2448
macs
2247
r
957
chromhmm
787
encode-ccres
239
abc
122
deseq2
119
deltasvm
97
qTLtools
32
cicero
25
nospecificsoft_customcode
25
seurat
24
chicago
18
samtools
15
limix
14
hiccups
14
matrix-eQTL
12
deeptools
12
gtex_eqtl:V8
12
umitools
11
rasqual
9
salmon
8
fastqtl
6
eigenmt
5
peer
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
pepatac
1
probabel
1
snap
1
spp
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
Fine-mapped variants
organ_slims!
brain
Showing 4 of 4 results
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Download
FileSet
DSR397GGI
released
Annotation file set
: eQTLS in different tissues: subcutaneous fat (609 samples)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR767ENC
released
Annotation file set
: eQTLS in different tissues: omental fat (741 samples)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR606JYM
released
Annotation file set
: eQTLS in different tissues: liver (960 samples)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR124JTW
released
Annotation file set
: DNase I Hypersensitive Sites (DHSs) defined using a consensus-based approach (https://github.com/Altius/Index) across 733 human biosamples. Each DHS is annotated with a signal level which can be used as a confidence score, as well as estimates for its summit position and summit variability (as captured by the 'core' coordinates).
Lab:
AMP-T2D consortium
Project:
AMP