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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
6
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
Biosample term
95
monocyte
82
heart
81
stomach
68
brain
66
lung
66
muscle of arm
64
HeLa-S3
64
kidney
61
A549
61
small intestine
59
adrenal gland
58
placenta
56
muscle of leg
55
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
47
thymus
45
H1-hESC
44
right lung
43
CD8-positive, alpha-beta T cell
43
liver
41
hematopoietic multipotent progenitor cell
41
right kidney
40
K562
39
renal cortex interstitium
38
renal pelvis
36
left kidney
34
B cell
34
neural progenitor cell
32
CD4-positive, alpha-beta memory T cell
32
spinal cord
31
CD14-positive monocyte
29
heart left ventricle
29
spleen
26
adipose tissue
25
MCF-7
24
islet of Langerhans
22
CD8-positive, alpha-beta memory T cell
22
body of pancreas
22
sigmoid colon
22
trophoblast cell
21
foreskin keratinocyte
20
breast cancer cell
20
mononuclear cell
19
HFFc6
19
keratinocyte
19
psoas muscle
19
tibial nerve
18
caudate nucleus
18
foreskin fibroblast
17
adipocyte
17
endothelial cell of umbilical vein
17
muscle of trunk
17
ovary
16
H9
16
chorionic villus
16
fibroblast of lung
16
gastrocnemius medialis
16
heart right ventricle
16
retina
16
thyroid gland
16
transverse colon
15
GM12878
15
coronary artery
15
hepatocyte
15
layer of hippocampus
15
mesenchymal stem cell
15
natural killer cell
15
pancreas
15
skeletal muscle tissue
15
substantia nigra
15
upper lobe of left lung
14
CD4-positive, alpha-beta T cell
14
HepG2
14
T cell
14
cardiac muscle cell
14
endocrine pancreas
14
fibroblast
14
mammary gland epithelial cell
14
neutrophil
14
omental fat pad
14
testis
14
tibial artery
13
ascending aorta
13
endothelial cell
13
fibroblast of cardiac tissue
13
neurosphere
13
regulatory T cell
13
right atrium auricular region
13
skeletal muscle myoblast
13
smooth muscle cell
13
subcutaneous adipose tissue
12
Peyer's patch
12
aorta
12
bronchial epithelial cell
12
cerebellum
12
fibroblast of dermis
12
neuroblastoma cell
11
T-helper 17 cell
11
mammary epithelial cell
11
pancreatic ductal cell
11
prostate gland
11
temporal lobe
10
22Rv1
10
T-helper 1 cell
10
T-helper 2 cell
10
epithelial cell of prostate
10
gastric cancer cell
10
left renal cortex interstitium
10
lymphocyte
10
osteoblast
10
putamen
10
right renal cortex interstitium
9
Ammon's horn
9
Rhabdomyosarcoma
9
SK-N-SH
9
breast epithelium
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus squamous epithelium
9
left cardiac atrium
9
left renal pelvis
9
liposarcoma
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
neuronal stem cell
9
parathyroid adenoma
9
pericyte cell
9
right renal pelvis
9
thoracic aorta
9
trophoblast
8
B-lymphoblastoid cell line
8
HEK293
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
embryonic stem cell
8
endodermal cell
8
esophagus
8
fibroblast cell line
8
frontal cortex
8
immortal human breast epithelial cell line cell
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pancreatic delta cell
8
pituitary stalk
8
tongue
7
GM06990
7
GM12864
7
GM12865
7
GM19239
7
HT-29
7
IMR-90
7
NAMALWA cell
7
SK-N-DZ
7
SK-N-MC
7
T47D
7
angular gyrus
7
astrocyte
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
foreskin melanocyte
7
limb
7
mature neutrophil
7
mesendoderm
7
right lobe of liver
7
stomach smooth muscle
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
EndoC_BH1
6
GM08714
6
GM12875
6
GM12892
6
GM19238
6
GM19240
6
HAP-1
6
HCT116
6
KARPAS-422 cell
6
WERI-Rb-1
6
WI38
6
chorion membrane
6
choroid plexus epithelial cell
6
esophagus muscularis mucosa
6
fibroblast of breast
6
fibroblast of mammary gland
6
fibroblast of pulmonary artery
6
hESC cell
Life stage
4
embryonic
Date released
3
February, 2021
3
September, 2022
1
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type!
accessible chromatin
gene expression
month_released!
February, 2023
January, 2022
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP