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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
81
heart
81
stomach
67
brain
67
lung
66
muscle of arm
64
HeLa-S3
62
kidney
62
small intestine
60
A549
60
adrenal gland
57
placenta
56
muscle of leg
54
common myeloid progenitor, CD34-positive
54
large intestine
54
muscle of back
52
left lung
46
thymus
44
H1-hESC
44
right lung
41
liver
41
right kidney
40
hematopoietic multipotent progenitor cell
39
K562
39
renal cortex interstitium
38
renal pelvis
36
left kidney
32
B cell
32
CD4-positive, alpha-beta memory T cell
32
spinal cord
31
CD14-positive monocyte
30
spleen
29
heart left ventricle
27
adipose tissue
26
islet of Langerhans
23
MCF-7
22
CD8-positive, alpha-beta memory T cell
22
sigmoid colon
21
trophoblast cell
20
foreskin keratinocyte
20
mononuclear cell
19
HFFc6
19
psoas muscle
18
body of pancreas
18
neural progenitor cell
18
ovary
17
adipocyte
17
endothelial cell of umbilical vein
17
muscle of trunk
17
thyroid gland
17
transverse colon
16
H9
16
T cell
16
chorionic villus
16
fibroblast of lung
16
gastrocnemius medialis
16
heart right ventricle
16
hepatocyte
16
keratinocyte
16
macrophage
16
tibial nerve
15
foreskin fibroblast
15
mesenchymal stem cell
15
neutrophil
15
pancreas
14
GM12878
14
endocrine pancreas
14
endothelial cell
14
layer of hippocampus
14
natural killer cell
14
regulatory T cell
14
skeletal muscle tissue
14
smooth muscle cell
14
testis
14
upper lobe of left lung
13
Peyer's patch
13
caudate nucleus
13
fibroblast
13
mammary gland epithelial cell
13
neurosphere
13
retina
13
skeletal muscle myoblast
12
CD8-positive, alpha-beta T cell
12
T-helper 1 cell
12
T-helper 17 cell
12
aorta
12
cardiac muscle cell
12
coronary artery
12
fibroblast of dermis
11
CD4-positive, alpha-beta T cell
11
T-helper 2 cell
11
fibroblast of cardiac tissue
10
HepG2
10
SK-N-SH
10
left renal cortex interstitium
10
monocyte
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
prostate gland
10
right renal cortex interstitium
10
substantia nigra
10
temporal lobe
10
tibial artery
9
22Rv1
9
breast epithelium
9
bronchial epithelial cell
9
colonic mucosa
9
epithelial cell of prostate
9
esophagus
9
esophagus squamous epithelium
9
left cardiac atrium
9
left renal pelvis
9
parathyroid adenoma
9
pericyte cell
9
right renal pelvis
9
thoracic aorta
9
trophoblast
8
breast cancer cell
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
esophagus muscularis mucosa
8
immortal human breast epithelial cell line cell
8
lower leg skin
8
lymphocyte
8
mammary epithelial cell
8
myoepithelial cell of mammary gland
8
naive T cell
8
omental fat pad
8
pituitary stalk
8
right atrium auricular region
8
skeletal muscle satellite cell
8
subcutaneous adipose tissue
8
tongue
8
vagina
7
HEK293
7
IMR-90
7
LNCaP clone FGC
7
NAMALWA cell
7
SK-N-DZ
7
T47D
7
angular gyrus
7
ascending aorta
7
endometrium adenocarcinoma
7
eye
7
fibroblast cell line
7
kidney tubule cell
7
limb
7
lymphoblastoid cell line
7
osteoblast
7
stomach smooth muscle
6
Brodmann (1909) area 46
6
GM06990
6
GM08714
6
GM12864
6
GM12865
6
GM12875
6
GM19238
6
GM19239
6
GM19240
6
HAP-1
6
HCT116
6
HL-60
6
HT-29
6
MM.1S
6
OCI-LY7
6
PC-9
6
SK-N-MC
6
WI38
6
cerebellum
6
chorion membrane
6
dermis lymphatic vessel endothelial cell
6
embryonic stem cell
6
endodermal cell
6
fibroblast of breast
6
foreskin melanocyte
6
frontal cortex
6
iPSC derived cell line
6
induced pluripotent stem cell
6
kidney glomerular epithelial cell
6
mucosa of rectum
6
putamen
6
skin fibroblast
6
uterus
5
A673
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Ammon's horn
5
BE(2)-C
5
BJ cell
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Caco-2 cell
5
Daoy
5
EndoC_BH1
5
GM10248
5
GM10266
5
GM12891
5
GM12892
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
annotation_type!
accessible chromatin
histone modifications
files.file_type!
bed bed9+
tsv
Showing 1 of 1 results
table-tab-icon
matrix-icon
Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP