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Schema
Citing CMDGA
Clear Filters
Annotation type
accessible chromatin
1
candidate regulatory elements
1
chromatin state
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
2
ChIP-seq
2
DNase-seq
Available data
1
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
65
heart
62
stomach
57
kidney
55
brain
50
muscle of arm
45
small intestine
44
adrenal gland
44
placenta
42
muscle of leg
41
large intestine
41
muscle of back
37
islet of Langerhans
35
liver
33
thymus
31
right kidney
30
renal cortex interstitium
29
renal pelvis
27
left kidney
24
heart left ventricle
24
spleen
22
adipose tissue
22
spinal cord
19
body of pancreas
19
subcutaneous adipose tissue
19
tibial nerve
17
caudate nucleus
16
substantia nigra
15
coronary artery
15
sigmoid colon
14
omental fat pad
14
ovary
14
retina
14
right atrium auricular region
14
testis
14
tibial artery
13
ascending aorta
13
cerebellum
13
heart right ventricle
13
layer of hippocampus
13
skeletal muscle tissue
13
thyroid gland
13
transverse colon
12
chorionic villus
12
frontal cortex
12
gastrocnemius medialis
12
muscle of trunk
12
pancreas
12
putamen
12
temporal lobe
11
endocrine pancreas
11
prostate gland
11
psoas muscle
10
Peyer's patch
10
left cardiac atrium
9
aorta
9
left renal cortex interstitium
9
left renal pelvis
9
right renal pelvis
8
Ammon's horn
8
angular gyrus
8
colonic mucosa
8
esophagus muscularis mucosa
8
esophagus squamous epithelium
8
lower leg skin
8
right lobe of liver
8
right renal cortex interstitium
8
thoracic aorta
8
vagina
7
amygdala
7
breast epithelium
7
cingulate gyrus
7
duodenal mucosa
7
esophagus
7
hypothalamus
7
mucosa of rectum
7
nucleus accumbens
7
parathyroid adenoma
7
stomach smooth muscle
7
trophoblast
6
anterior cingulate cortex
6
cerebellum (Hemisphere)
6
chorion membrane
6
eye
6
gastroesophageal sphincter
6
muscle layer of colon
6
muscle layer of duodenum
6
right cardiac atrium
6
subcutaneous abdominal adipose tissue
6
tongue
6
uterus
5
C1 segment of cervical spinal cord
5
cartilage tissue
5
gastrocnemius medialis(Muscle - Skeletal)
5
globus pallidus
5
left ventricle myocardium
5
limb
5
midbrain
5
occipital lobe
5
skin of body
5
urinary bladder
4
Brodmann (1909) area 46
4
bone tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
germinal matrix
4
middle frontal gyrus
4
superior temporal gyrus
4
umbilical cord
4
visceral abdominal adipose tissue
3
amnion
3
cerebellar cortex
3
cortex of kidney
3
femur
3
medulla oblongata
3
mucosa of stomach
3
pons
3
rectum smooth muscle tissue
3
suprapubic skin
2
muscle of leg
2
arm bone
2
blood
2
breast carcinoma
2
chorion
2
dorsolateral prefrontal cortex
2
embryonic facial prominence
2
endometrium cancer
2
fallopian tube
2
first pancreatic bud
2
germinal center
2
inferior parietal cortex
2
kidney epithelium
2
leg bone
2
mammary gland
2
middle frontal area 46
2
minor salivary gland
2
pituitary gland
2
placental basal plate
2
prefrontal cortex
2
respiratory system smooth muscle
2
skeletal muscle
2
skin of forearm
2
skin of prepuce of penis
2
tissue
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
abdominal aorta artery
1
anterior parahippocampal gyrus
1
aorta wall
1
aortic valve
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
bladder
1
breast
1
breast - mammary tissue
1
caput epididymis
1
cardiogenic mesoderm
1
cerebellar hemisphere
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
circle of Willis
1
claustrum of brain
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
corneal epithelium
1
cortex
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
endometrium
1
entorhinal cortex
1
epididymis
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
forelimb muscle
1
frontal pole
1
gyrus rectus
1
hindlimb muscle
1
intestinal epithelium
1
kidney - cortex
1
kidney - medulla
1
left leg bone
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulloblastoma
1
metanephros
1
mid-frontal lobe
1
mitral valve
1
morula
1
myelencephalon
1
nephron tubule
1
nucleus of ventral thalamus
Organ
3
brain
Life stage
3
adult
Date released
2
September, 2022
1
May, 2020
Software used
1
chromhmm
1
deltasvm
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
annotation_type!
accessible chromatin
target gene predictions
organ_slims!
lung
Showing 3 of 3 results
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Download
FileSet
DSR513IDU
released
Annotation file set
: Candidate regulatory elements for BSS01451 pons from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR317TKO
released
Annotation file set
: Chromatin states for BSS01451 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR982FHO
released
Annotation file set
: Variant allelic effects of pons ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP