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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
accessible chromatin
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
5
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
pCHi-C
1
snATAC-seq
1
snRNA-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
primary cell
Biosample term
23
stomach
20
heart
19
CD14-positive monocyte
18
muscle of arm
17
lung
16
adrenal gland
16
kidney
16
large intestine
15
common myeloid progenitor, CD34-positive
15
muscle of back
15
muscle of leg
15
small intestine
14
brain
13
left lung
13
placenta
12
renal cortex interstitium
11
renal pelvis
11
right kidney
11
right lung
10
pituitary stalk
10
spleen
10
thymus
9
CD8-positive, alpha-beta T cell
9
hematopoietic multipotent progenitor cell
9
left kidney
8
CD4-positive, alpha-beta T cell
8
spinal cord
7
B cell
7
H9
7
cardiac muscle cell
7
foreskin keratinocyte
7
heart left ventricle
7
liver
6
T-cell
6
adipocyte
6
body of pancreas
6
dendritic cell
6
endothelial cell of umbilical vein
6
foreskin fibroblast
6
sigmoid colon
6
trophoblast cell
5
CD4-positive, alpha-beta memory T cell
5
MCF-7
5
gastrocnemius medialis
5
left renal cortex interstitium
5
left renal pelvis
5
muscle of trunk
5
ovary
5
pancreas
5
right renal pelvis
5
subcutaneous abdominal adipose tissue
5
thyroid gland
5
transverse colon
4
A549
4
Peyer's patch
4
WI38
4
breast epithelium
4
chorionic villus
4
dermis blood vessel endothelial cell
4
esophagus squamous epithelium
4
fibroblast of lung
4
gastroesophageal sphincter
4
heart right ventricle
4
lower leg skin
4
mammary epithelial cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
natural killer cell
4
neurosphere
4
peripheral blood mononuclear cell
4
psoas muscle
4
retina
4
right renal cortex interstitium
4
skeletal muscle myoblast
4
testis
4
tibial nerve
4
upper lobe of left lung
3
HeLa-S3
3
LNCAP
3
MCF 10A
3
SK-N-SH
3
T-helper 1 cell
3
ascending aorta
3
cardiac fibroblast
3
caudate nucleus
3
coronary artery
3
endocrine pancreas
3
epithelial cell of prostate
3
esophagus muscularis mucosa
3
foreskin melanocyte
3
hepatocyte
3
layer of hippocampus
3
mesenchymal stem cell
3
mesodermal cell
3
neuronal stem cell
3
omental fat pad
3
parathyroid adenoma
3
skeletal muscle tissue
3
substantia nigra
3
suprapubic skin
3
temporal lobe
3
uterus
2
cardiac fibroblast
2
muscle of leg
2
22Rv1
2
A673
2
AG10803
2
BJAB cell
2
CD4-positive helper T cell
2
GM12878
2
HAP-1
2
HEK293
2
HT-29
2
HepG2
2
IMR-90
2
Jurkat
2
K562
2
MCF 10A cell
2
MM.1S
2
NAMALWA
2
OCI-LY7
2
PC-9
2
Panc1
2
SK-N-DZ
2
T-helper 17 cell
2
T-helper 2 cell
2
THP-1
2
U937
2
adipose tissue
2
angular gyrus
2
aorta
2
astrocyte
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
bipolar neuron
2
brain pericyte
2
bronchial epithelial cell
2
cardiac myoblast
2
cardiovascular progenitor cell
2
chorion
2
choroid plexus epithelial cell
2
cingulate gyrus
2
colonic mucosa
2
dermis microvascular lymphatic vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
epithelial cell of proximal tubule
2
esophagus
2
eye
2
fibroblast of breast
2
fibroblast of dermis
2
globus pallidus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
iPS DF 19.11
2
keratinocyte
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
left cardiac atrium
2
lung microvascular endothelial cell
2
mesendoderm
2
middle frontal area 46
2
middle frontal gyrus
2
mucosa of rectum
2
muscle layer of colon
2
muscle layer of duodenum
2
myocyte
2
myoepithelial cell of mammary gland
2
myotube
2
neural cell
2
neuroepithelial stem cell
2
neutrophil
2
osteoblast
2
placental basal plate
2
prostate gland
2
putamen
2
regulatory T cell
2
renal cortical epithelial cell
2
right atrium auricular region
2
skeletal muscle cell
2
smooth muscle cell of the brain vasculature
2
stomach smooth muscle
2
subcutaneous adipose tissue
2
thoracic aorta
2
tibial artery
2
tongue
2
trophoblast
2
vagina
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
A172
1
ACC112
1
ACHN
1
AG04449
1
AG04450
1
AG09309
1
AG09319
1
Ammon's horn
Organ
3
connective tissue
Life stage
1
adult
1
embryonic
Date released
September, 2022
2
February, 2021
1
May, 2021
Software used
2
encode-ccres
1
abc
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
annotation_type!
accessible chromatin
biosample_term_name!
colon epithelial cell
month_released!
September, 2022
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR718ELE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP